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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
45301-45350 / 86044 show all | |||||||||||||||
| anovak-vg | INDEL | I16_PLUS | map_l150_m2_e1 | homalt | 33.3333 | 33.3333 | 33.3333 | 76.0000 | 1 | 2 | 2 | 4 | 3 | 75.0000 | |
| astatham-gatk | INDEL | D16_PLUS | HG002complexvar | homalt | 98.9655 | 99.3080 | 98.6254 | 76.4372 | 287 | 2 | 287 | 4 | 3 | 75.0000 | |
| astatham-gatk | INDEL | D16_PLUS | HG002compoundhet | het | 88.8320 | 99.5062 | 80.2260 | 58.8850 | 403 | 2 | 284 | 70 | 68 | 97.1429 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.2908 | 99.7807 | 98.8056 | 70.4524 | 910 | 2 | 910 | 11 | 8 | 72.7273 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.6954 | 99.5943 | 99.7967 | 57.2917 | 491 | 2 | 491 | 1 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 96.9811 | 99.2278 | 94.8339 | 60.4956 | 257 | 2 | 257 | 14 | 13 | 92.8571 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.5527 | 99.7211 | 97.4114 | 61.5908 | 715 | 2 | 715 | 19 | 18 | 94.7368 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 96.7778 | 99.6205 | 94.0928 | 82.7887 | 525 | 2 | 446 | 28 | 25 | 89.2857 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 98.8792 | 99.4987 | 98.2673 | 65.6463 | 397 | 2 | 397 | 7 | 5 | 71.4286 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 94.9640 | 97.0588 | 92.9577 | 96.7356 | 66 | 2 | 66 | 5 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 92.3077 | 95.4545 | 89.3617 | 96.6284 | 42 | 2 | 42 | 5 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.1642 | 98.7805 | 91.8033 | 88.0392 | 162 | 2 | 112 | 10 | 8 | 80.0000 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 77.4194 | 75.0000 | 80.0000 | 92.3077 | 6 | 2 | 4 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 95.8333 | 92.0000 | 100.0000 | 44.4444 | 23 | 2 | 25 | 0 | 0 | ||
| astatham-gatk | INDEL | D16_PLUS | map_l100_m0_e0 | het | 84.4720 | 89.4737 | 80.0000 | 97.0545 | 17 | 2 | 16 | 4 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | segdup | * | 90.3226 | 96.5517 | 84.8485 | 96.3435 | 56 | 2 | 56 | 10 | 2 | 20.0000 | |
| astatham-gatk | INDEL | D16_PLUS | segdup | hetalt | 87.5000 | 77.7778 | 100.0000 | 93.1298 | 7 | 2 | 9 | 0 | 0 | ||
| astatham-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7250 | 99.6337 | 99.8165 | 77.9263 | 544 | 2 | 544 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 75.8242 | 97.1831 | 62.1622 | 52.7660 | 69 | 2 | 69 | 42 | 42 | 100.0000 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.6750 | 99.5671 | 99.7831 | 29.4028 | 460 | 2 | 460 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 94.0000 | 12 | 2 | 12 | 0 | 0 | ||
| astatham-gatk | INDEL | D1_5 | map_l125_m1_e0 | homalt | 99.4269 | 99.4269 | 99.4269 | 85.3484 | 347 | 2 | 347 | 2 | 2 | 100.0000 | |
| astatham-gatk | INDEL | D1_5 | map_l125_m2_e0 | homalt | 99.4505 | 99.4505 | 99.4505 | 86.1280 | 362 | 2 | 362 | 2 | 2 | 100.0000 | |
| astatham-gatk | INDEL | D1_5 | map_l125_m2_e1 | homalt | 99.4624 | 99.4624 | 99.4624 | 86.1090 | 370 | 2 | 370 | 2 | 2 | 100.0000 | |
| astatham-gatk | INDEL | D1_5 | map_l150_m1_e0 | homalt | 99.3407 | 99.1228 | 99.5595 | 87.5548 | 226 | 2 | 226 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | D1_5 | map_l150_m2_e0 | homalt | 99.3789 | 99.1736 | 99.5851 | 88.2324 | 240 | 2 | 240 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | D1_5 | map_l150_m2_e1 | homalt | 99.1935 | 99.1935 | 99.1935 | 88.1510 | 246 | 2 | 246 | 2 | 2 | 100.0000 | |
| astatham-gatk | INDEL | D1_5 | map_l250_m1_e0 | het | 94.3723 | 98.1982 | 90.8333 | 95.7865 | 109 | 2 | 109 | 11 | 1 | 9.0909 | |
| astatham-gatk | INDEL | D1_5 | map_l250_m2_e0 | het | 94.8207 | 98.3471 | 91.5385 | 95.9577 | 119 | 2 | 119 | 11 | 1 | 9.0909 | |
| astatham-gatk | INDEL | D1_5 | map_l250_m2_e1 | het | 94.8617 | 98.3607 | 91.6031 | 96.0122 | 120 | 2 | 120 | 11 | 1 | 9.0909 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 98.9522 | 99.9450 | 97.9790 | 62.2367 | 3636 | 2 | 3636 | 75 | 74 | 98.6667 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 98.3863 | 99.8976 | 96.9200 | 41.4826 | 1951 | 2 | 1951 | 62 | 62 | 100.0000 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 83.4646 | 98.7578 | 72.2727 | 36.0465 | 159 | 2 | 159 | 61 | 61 | 100.0000 | |
| astatham-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.8285 | 99.6575 | 100.0000 | 18.3473 | 582 | 2 | 583 | 0 | 0 | ||
| astatham-gatk | INDEL | D6_15 | map_l100_m1_e0 | homalt | 98.4127 | 96.8750 | 100.0000 | 86.5510 | 62 | 2 | 62 | 0 | 0 | ||
| astatham-gatk | INDEL | D6_15 | map_l100_m2_e0 | homalt | 98.4375 | 96.9231 | 100.0000 | 87.0902 | 63 | 2 | 63 | 0 | 0 | ||
| astatham-gatk | INDEL | D6_15 | map_l100_m2_e1 | homalt | 98.4848 | 97.0149 | 100.0000 | 87.0518 | 65 | 2 | 65 | 0 | 0 | ||
| astatham-gatk | INDEL | D6_15 | map_l125_m1_e0 | het | 96.8750 | 96.8750 | 96.8750 | 92.7273 | 62 | 2 | 62 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | D6_15 | map_l125_m2_e1 | hetalt | 94.7368 | 90.0000 | 100.0000 | 87.3239 | 18 | 2 | 18 | 0 | 0 | ||
| astatham-gatk | INDEL | D6_15 | map_l150_m2_e1 | * | 97.6471 | 97.6471 | 97.6471 | 92.8149 | 83 | 2 | 83 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D6_15 | segdup | het | 96.7742 | 97.8261 | 95.7447 | 95.1621 | 90 | 2 | 90 | 4 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I16_PLUS | HG002compoundhet | het | 85.1501 | 95.7447 | 76.6667 | 93.7759 | 45 | 2 | 23 | 7 | 7 | 100.0000 | |
| astatham-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 96.8974 | 99.0244 | 94.8598 | 91.2653 | 203 | 2 | 203 | 11 | 10 | 90.9091 | |
| astatham-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.6959 | 98.1481 | 97.2477 | 89.4482 | 106 | 2 | 106 | 3 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.1706 | 96.9697 | 95.3846 | 89.0756 | 64 | 2 | 62 | 3 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 96.1538 | 92.5926 | 100.0000 | 92.2481 | 25 | 2 | 20 | 0 | 0 | ||
| astatham-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 96.8974 | 99.0244 | 94.8598 | 91.2653 | 203 | 2 | 203 | 11 | 10 | 90.9091 | |
| astatham-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 66.6667 | 50.0000 | 100.0000 | 93.1034 | 2 | 2 | 2 | 0 | 0 | ||
| astatham-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 96.2963 | 92.8571 | 100.0000 | 60.0000 | 26 | 2 | 28 | 0 | 0 | ||
| astatham-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.8024 | 98.8095 | 98.7952 | 79.1980 | 166 | 2 | 164 | 2 | 1 | 50.0000 | |