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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 897 898 899 900 901 902 903 904 905 ... 1720 1721 » 45001-45050 / 86044 show all
dgrover-gatk	INDEL	D1_5	map_l250_m1_e0	homalt	98.2143	96.4912	100.0000	94.5437	55	2	55	0	0
dgrover-gatk	INDEL	D1_5	map_l250_m2_e0	homalt	98.3051	96.6667	100.0000	94.9565	58	2	58	0	0
dgrover-gatk	INDEL	D1_5	map_l250_m2_e1	homalt	98.3051	96.6667	100.0000	95.1014	58	2	58	0	0
dgrover-gatk	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	98.9522	99.9450	97.9790	62.3287	3636	2	3636	75	74	98.6667
dgrover-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.7394	99.6528	99.8261	69.1854	574	2	574	1	1	100.0000
dgrover-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_11to50	homalt	98.3863	99.8976	96.9200	41.5335	1951	2	1951	62	62	100.0000
dgrover-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	homalt	83.4646	98.7578	72.2727	35.4839	159	2	159	61	61	100.0000
ckim-isaac	INDEL	I6_15	lowcmp_SimpleRepeat_homopolymer_gt10	*		0.0000		100.0000	0	2	0	0	0
ckim-isaac	INDEL	I6_15	lowcmp_SimpleRepeat_homopolymer_gt10	hetalt		0.0000		100.0000	0	2	0	0	0
ckim-isaac	INDEL	I6_15	map_l125_m1_e0	hetalt	85.7143	75.0000	100.0000	84.0909	6	2	7	0	0
ckim-isaac	INDEL	I6_15	map_l125_m2_e0	hetalt	85.7143	75.0000	100.0000	87.5000	6	2	7	0	0
ckim-isaac	INDEL	I6_15	map_l125_m2_e1	hetalt	85.7143	75.0000	100.0000	88.1356	6	2	7	0	0
ckim-isaac	INDEL	I6_15	map_l150_m0_e0	het	66.6667	50.0000	100.0000	98.1982	2	2	2	0	0
ckim-isaac	INDEL	I6_15	map_l250_m1_e0	homalt	50.0000	33.3333	100.0000	95.4545	1	2	1	0	0
ckim-isaac	INDEL	I6_15	map_l250_m2_e0	homalt	50.0000	33.3333	100.0000	95.8333	1	2	1	0	0
ckim-isaac	INDEL	I6_15	map_l250_m2_e1	homalt	50.0000	33.3333	100.0000	96.1538	1	2	1	0	0
ckim-isaac	SNP	*	lowcmp_SimpleRepeat_triTR_51to200	het	83.3333	71.4286	100.0000	94.9495	5	2	5	0	0
ckim-isaac	SNP	*	map_l250_m1_e0	hetalt	66.6667	50.0000	100.0000	92.3077	2	2	2	0	0
ckim-isaac	SNP	ti	lowcmp_SimpleRepeat_triTR_51to200	het	80.0000	66.6667	100.0000	94.8052	4	2	4	0	0
ckim-isaac	SNP	ti	map_l250_m1_e0	hetalt	66.6667	50.0000	100.0000	88.2353	2	2	2	0	0
ckim-isaac	SNP	tv	map_l250_m1_e0	hetalt	66.6667	50.0000	100.0000	92.3077	2	2	2	0	0
ckim-isaac	SNP	tv	tech_badpromoters	het	95.3846	93.9394	96.8750	30.4348	31	2	31	1	0	0.0000
ckim-vqsr	INDEL	*	HG002compoundhet	homalt	61.0714	99.7085	44.0154	84.7468	684	2	684	870	867	99.6552
ckim-vqsr	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7617	99.8940	99.6298	72.7247	1884	2	1884	7	5	71.4286
ckim-vqsr	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.9064	99.9065	99.9064	76.8906	2136	2	2134	2	1	50.0000
ckim-vqsr	INDEL	*	lowcmp_SimpleRepeat_quadTR_51to200	homalt	98.6908	99.5935	97.8044	62.6398	490	2	490	11	9	81.8182
ckim-vqsr	INDEL	*	map_l125_m0_e0	homalt	98.9474	99.2958	98.6014	88.7224	282	2	282	4	3	75.0000
ckim-vqsr	INDEL	*	map_l250_m0_e0	het	83.6066	96.2264	73.9130	98.5907	51	2	51	18	0	0.0000
ckim-vqsr	INDEL	*	map_l250_m1_e0	hetalt	80.0000	66.6667	100.0000	98.1308	4	2	4	0	0
ckim-vqsr	INDEL	*	map_l250_m1_e0	homalt	98.6175	98.1651	99.0741	95.2880	107	2	107	1	1	100.0000
ckim-vqsr	INDEL	*	map_l250_m2_e0	hetalt	80.0000	66.6667	100.0000	98.4496	4	2	4	0	0
ckim-vqsr	INDEL	*	map_l250_m2_e0	homalt	98.6900	98.2609	99.1228	95.6900	113	2	113	1	1	100.0000
ckim-vqsr	INDEL	*	map_l250_m2_e1	hetalt	80.0000	66.6667	100.0000	98.4791	4	2	4	0	0
ckim-vqsr	INDEL	*	map_l250_m2_e1	homalt	98.7013	98.2759	99.1304	95.7549	114	2	114	1	1	100.0000
ckim-vqsr	INDEL	*	segdup	homalt	99.3776	99.7917	98.9669	93.6950	958	2	958	10	9	90.0000
ckim-vqsr	INDEL	D16_PLUS	HG002complexvar	homalt	98.7952	99.3080	98.2877	76.3371	287	2	287	5	4	80.0000
ckim-vqsr	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	97.8852	99.5902	96.2376	72.0686	486	2	486	19	18	94.7368
asubramanian-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.8726	99.7455	100.0000	62.0339	784	2	784	0	0
asubramanian-gatk	SNP	tv	lowcmp_SimpleRepeat_diTR_51to200	*	90.5660	92.3077	88.8889	96.6165	24	2	24	3	0	0.0000
asubramanian-gatk	SNP	tv	lowcmp_SimpleRepeat_diTR_51to200	het	93.7500	88.2353	100.0000	97.4490	15	2	15	0	0
asubramanian-gatk	SNP	tv	map_l150_m0_e0	hetalt	50.0000	33.3333	100.0000	98.0000	1	2	1	0	0
asubramanian-gatk	SNP	tv	tech_badpromoters	*	97.9021	97.2222	98.5915	53.5948	70	2	70	1	1	100.0000
bgallagher-sentieon	INDEL	*	HG002compoundhet	homalt	53.1056	99.7085	36.1905	83.1205	684	2	684	1206	1203	99.7512
bgallagher-sentieon	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.6825	99.8940	99.4720	72.6656	1884	2	1884	10	8	80.0000
bgallagher-sentieon	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.8363	99.9065	99.7662	76.2965	2136	2	2134	5	1	20.0000
bgallagher-sentieon	INDEL	*	lowcmp_SimpleRepeat_quadTR_51to200	homalt	98.0981	99.5935	96.6469	61.7358	490	2	490	17	16	94.1176
bgallagher-sentieon	INDEL	*	map_l100_m0_e0	hetalt	95.4305	93.9394	96.9697	90.0901	31	2	32	1	0	0.0000
bgallagher-sentieon	INDEL	*	map_l125_m0_e0	homalt	98.6014	99.2958	97.9167	88.2112	282	2	282	6	4	66.6667
bgallagher-sentieon	INDEL	*	map_l125_m1_e0	hetalt	97.4359	95.0000	100.0000	91.8455	38	2	38	0	0
bgallagher-sentieon	INDEL	*	map_l125_m2_e0	hetalt	97.5610	95.2381	100.0000	92.5512	40	2	40	0	0

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