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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 896 897 898 899 900 901 902 903 904 ... 1720 1721 » 44951-45000 / 86044 show all
ckim-vqsr	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.5763	99.1561	100.0000	23.6246	235	2	236	0	0
ckim-vqsr	INDEL	I6_15	map_l100_m1_e0	hetalt	95.2381	90.9091	100.0000	80.0000	20	2	20	0	0
ckim-vqsr	INDEL	I6_15	map_l100_m2_e0	hetalt	95.2381	90.9091	100.0000	81.6514	20	2	20	0	0
ckim-vqsr	INDEL	I6_15	map_l100_m2_e1	hetalt	95.2381	90.9091	100.0000	82.3009	20	2	20	0	0
ckim-vqsr	INDEL	I6_15	map_l125_m0_e0	*	92.8571	86.6667	100.0000	96.5333	13	2	13	0	0
ckim-vqsr	INDEL	I6_15	map_l150_m1_e0	*	95.8333	92.0000	100.0000	96.3082	23	2	23	0	0
ckim-vqsr	INDEL	I6_15	map_l150_m2_e0	*	95.8333	92.0000	100.0000	96.7422	23	2	23	0	0
ckim-vqsr	INDEL	I6_15	map_l150_m2_e1	*	96.1538	92.5926	100.0000	96.5847	25	2	25	0	0
ckim-vqsr	INDEL	I6_15	map_l250_m1_e0	*	83.3333	71.4286	100.0000	98.7047	5	2	5	0	0
ckim-vqsr	INDEL	I6_15	map_l250_m2_e0	*	85.7143	75.0000	100.0000	98.6333	6	2	6	0	0
ckim-vqsr	INDEL	I6_15	map_l250_m2_e1	*	85.7143	75.0000	100.0000	98.6928	6	2	6	0	0
ckim-vqsr	INDEL	I6_15	segdup	het	98.1818	97.5904	98.7805	95.4267	81	2	81	1	0	0.0000
ckim-vqsr	INDEL	I6_15	segdup	hetalt	97.7273	95.5556	100.0000	89.5377	43	2	43	0	0
ckim-vqsr	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.9276	99.8554	100.0000	56.9648	1381	2	1381	0	0
ckim-vqsr	SNP	*	tech_badpromoters	het	98.6842	97.4026	100.0000	50.9804	75	2	75	0	0
ckim-vqsr	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.8088	99.6183	100.0000	64.2221	522	2	522	0	0
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.8726	99.7455	100.0000	61.9602	784	2	784	0	0
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.8092	99.6190	100.0000	67.3737	523	2	523	0	0
ckim-vqsr	SNP	tv	lowcmp_SimpleRepeat_quadTR_51to200	*	96.3855	95.2381	97.5610	89.5939	40	2	40	1	0	0.0000
ckim-vqsr	SNP	tv	lowcmp_SimpleRepeat_quadTR_51to200	het	95.7746	94.4444	97.1429	88.4488	34	2	34	1	0	0.0000
ckim-vqsr	SNP	tv	tech_badpromoters	*	97.9021	97.2222	98.5915	53.2895	70	2	70	1	1	100.0000
dgrover-gatk	INDEL	*	HG002compoundhet	homalt	61.4004	99.7085	44.3580	85.1072	684	2	684	858	856	99.7669
dgrover-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7617	99.8940	99.6298	72.7364	1884	2	1884	7	5	71.4286
dgrover-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.8597	99.9065	99.8129	76.6441	2136	2	2134	4	1	25.0000
dgrover-gatk	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.7781	99.9671	99.5898	57.9684	6070	2	6070	25	24	96.0000
dgrover-gatk	INDEL	*	lowcmp_SimpleRepeat_quadTR_51to200	homalt	98.5915	99.5935	97.6096	62.3406	490	2	490	12	11	91.6667
dgrover-gatk	INDEL	*	map_l100_m0_e0	hetalt	95.4305	93.9394	96.9697	91.1051	31	2	32	1	0	0.0000
dgrover-gatk	INDEL	*	map_l125_m1_e0	hetalt	97.4359	95.0000	100.0000	92.6357	38	2	38	0	0
dgrover-gatk	INDEL	*	map_l125_m2_e0	hetalt	97.5610	95.2381	100.0000	93.2546	40	2	40	0	0
dgrover-gatk	INDEL	*	map_l150_m2_e1	hetalt	95.4545	91.3043	100.0000	95.3846	21	2	21	0	0
dgrover-gatk	INDEL	*	map_l250_m0_e0	homalt	92.0000	92.0000	92.0000	97.6482	23	2	23	2	1	50.0000
dgrover-gatk	INDEL	*	segdup	homalt	99.4292	99.7917	99.0693	93.7134	958	2	958	9	8	88.8889
dgrover-gatk	INDEL	D16_PLUS	HG002complexvar	homalt	98.7952	99.3080	98.2877	76.1047	287	2	287	5	4	80.0000
dgrover-gatk	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.2366	99.7807	98.6985	70.3346	910	2	910	12	9	75.0000
dgrover-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.6954	99.5943	99.7967	57.4026	491	2	491	1	0	0.0000
dgrover-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	homalt	98.7562	99.4987	98.0247	65.4437	397	2	397	8	6	75.0000
dgrover-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	homalt	94.3396	98.4252	90.5797	53.8462	125	2	125	13	12	92.3077
dgrover-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_51to200	het	95.5702	98.7805	92.5620	88.2296	162	2	112	9	7	77.7778
dgrover-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_51to200	het	77.4194	75.0000	80.0000	92.5373	6	2	4	1	1	100.0000
dgrover-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_51to200	hetalt	95.8333	92.0000	100.0000	44.4444	23	2	25	0	0
dgrover-gatk	INDEL	D16_PLUS	map_l100_m0_e0	het	82.2995	89.4737	76.1905	96.8278	17	2	16	5	0	0.0000
dgrover-gatk	INDEL	D16_PLUS	map_l125_m2_e1	*	89.6552	92.8571	86.6667	97.2653	26	2	26	4	0	0.0000
dgrover-gatk	INDEL	D16_PLUS	map_l150_m2_e1	*	86.4865	88.8889	84.2105	97.3973	16	2	16	3	0	0.0000
dgrover-gatk	INDEL	D16_PLUS	segdup	*	92.5620	96.5517	88.8889	96.4467	56	2	56	7	2	28.5714
dgrover-gatk	INDEL	D16_PLUS	segdup	hetalt	87.5000	77.7778	100.0000	93.1818	7	2	9	0	0
dgrover-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7250	99.6337	99.8165	77.9531	544	2	544	1	1	100.0000
dgrover-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_51to200	homalt	75.4098	97.1831	61.6071	52.3404	69	2	69	43	43	100.0000
dgrover-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.6750	99.5671	99.7831	29.8326	460	2	460	1	1	100.0000
dgrover-gatk	INDEL	D1_5	map_l100_m0_e0	hetalt	88.8889	85.7143	92.3077	93.6275	12	2	12	1	0	0.0000
dgrover-gatk	INDEL	D1_5	map_l150_m0_e0	homalt	98.2249	97.6471	98.8095	90.8795	83	2	83	1	1	100.0000

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