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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 895 896 897 898 899 900 901 902 903 ... 1720 1721 » 44901-44950 / 86044 show all
ckim-vqsr	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	96.7712	99.6205	94.0803	83.0466	525	2	445	28	26	92.8571
ckim-vqsr	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	homalt	98.8792	99.4987	98.2673	65.6463	397	2	397	7	5	71.4286
ckim-vqsr	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_51to200	het	95.1278	98.7805	91.7355	88.1139	162	2	111	10	8	80.0000
ckim-vqsr	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_51to200	het	77.4194	75.0000	80.0000	92.1875	6	2	4	1	1	100.0000
ckim-vqsr	INDEL	D16_PLUS	map_l100_m0_e0	*	89.6552	92.8571	86.6667	97.1910	26	2	26	4	0	0.0000
ckim-vqsr	INDEL	D16_PLUS	map_l100_m1_e0	het	88.7014	95.6522	82.6923	96.3989	44	2	43	9	4	44.4444
ckim-vqsr	INDEL	D16_PLUS	map_l100_m2_e0	het	88.9670	95.8333	83.0189	96.8187	46	2	44	9	4	44.4444
ckim-vqsr	INDEL	D16_PLUS	map_l100_m2_e1	het	89.5935	96.0784	83.9286	96.7136	49	2	47	9	4	44.4444
ckim-vqsr	INDEL	D16_PLUS	map_siren	het	92.4513	97.4359	87.9518	96.3127	76	2	73	10	2	20.0000
ckim-vqsr	INDEL	D16_PLUS	segdup	*	91.8033	96.5517	87.5000	96.9711	56	2	56	8	2	25.0000
ckim-vqsr	INDEL	D16_PLUS	segdup	hetalt	87.5000	77.7778	100.0000	92.8000	7	2	9	0	0
ckim-vqsr	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7250	99.6337	99.8165	78.0419	544	2	544	1	1	100.0000
ckim-vqsr	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.8588	99.8119	99.9058	81.3717	1061	2	1061	1	1	100.0000
ckim-vqsr	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	95.8904	94.5946	97.2222	86.4151	35	2	35	1	1	100.0000
ckim-vqsr	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_51to200	homalt	75.4098	97.1831	61.6071	52.7426	69	2	69	43	43	100.0000
ckim-vqsr	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.9182	99.9454	99.8909	51.3011	3664	2	3664	4	4	100.0000
ckim-vqsr	INDEL	D1_5	map_l100_m0_e0	homalt	99.0329	99.2248	98.8417	84.1880	256	2	256	3	2	66.6667
ckim-vqsr	INDEL	D1_5	map_l250_m1_e0	hetalt	50.0000	33.3333	100.0000	99.2647	1	2	1	0	0
ckim-vqsr	INDEL	D1_5	map_l250_m2_e0	hetalt	50.0000	33.3333	100.0000	99.3902	1	2	1	0	0
ckim-vqsr	INDEL	D1_5	map_l250_m2_e1	hetalt	50.0000	33.3333	100.0000	99.4048	1	2	1	0	0
ckim-vqsr	INDEL	D1_5	segdup	hetalt	98.0392	96.1538	100.0000	95.6336	50	2	51	0	0
ckim-vqsr	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.7394	99.6528	99.8261	70.1454	574	2	574	1	1	100.0000
ckim-vqsr	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_11to50	homalt	98.3615	99.8976	96.8719	41.6063	1951	2	1951	63	62	98.4127
ckim-vqsr	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	homalt	83.9050	98.7578	72.9358	36.8116	159	2	159	59	59	100.0000
ckim-vqsr	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.4350	99.2481	99.6226	83.0346	264	2	264	1	1	100.0000
ckim-vqsr	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	95.8904	94.5946	97.2222	60.8696	35	2	35	1	1	100.0000
ckim-vqsr	INDEL	D6_15	map_l100_m1_e0	homalt	98.4127	96.8750	100.0000	86.9748	62	2	62	0	0
ckim-vqsr	INDEL	D6_15	map_l100_m2_e0	homalt	98.4375	96.9231	100.0000	87.4251	63	2	63	0	0
ckim-vqsr	INDEL	D6_15	map_l100_m2_e1	homalt	98.4848	97.0149	100.0000	87.3294	65	2	65	0	0
ckim-vqsr	INDEL	D6_15	map_l125_m2_e1	hetalt	94.7368	90.0000	100.0000	88.0000	18	2	18	0	0
ckim-vqsr	INDEL	D6_15	map_l150_m1_e0	*	96.5986	97.2603	95.9459	94.3164	71	2	71	3	0	0.0000
ckim-vqsr	INDEL	D6_15	map_l150_m2_e0	*	96.9697	97.5610	96.3855	94.3422	80	2	80	3	0	0.0000
ckim-vqsr	INDEL	I16_PLUS	HG002compoundhet	het	85.1501	95.7447	76.6667	93.8017	45	2	23	7	7	100.0000
ckim-vqsr	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	96.6667	99.0244	94.4186	91.1777	203	2	203	12	11	91.6667
ckim-vqsr	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	97.0588	94.2857	100.0000	75.5245	33	2	35	0	0
ckim-vqsr	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	96.1538	92.5926	100.0000	92.1875	25	2	20	0	0
ckim-vqsr	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	96.6667	99.0244	94.4186	91.1777	203	2	203	12	11	91.6667
ckim-vqsr	INDEL	I16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	*	66.6667	50.0000	100.0000	93.1034	2	2	2	0	0
ckim-vqsr	INDEL	I16_PLUS	lowcmp_SimpleRepeat_homopolymer_6to10	het	92.8571	86.6667	100.0000	89.5161	13	2	13	0	0
ckim-vqsr	INDEL	I16_PLUS	map_l100_m1_e0	*	94.1176	92.3077	96.0000	96.2179	24	2	24	1	0	0.0000
ckim-vqsr	INDEL	I16_PLUS	map_l100_m2_e0	*	90.5660	92.3077	88.8889	96.4333	24	2	24	3	0	0.0000
ckim-vqsr	INDEL	I16_PLUS	map_l100_m2_e1	*	90.5660	92.3077	88.8889	96.4520	24	2	24	3	0	0.0000
ckim-vqsr	INDEL	I16_PLUS	map_siren	het	95.9184	95.9184	95.9184	92.9900	47	2	47	2	0	0.0000
ckim-vqsr	INDEL	I1_5	map_l250_m0_e0	*	86.2745	91.6667	81.4815	98.6855	22	2	22	5	1	20.0000
ckim-vqsr	INDEL	I1_5	map_l250_m0_e0	het	81.2500	86.6667	76.4706	98.9875	13	2	13	4	0	0.0000
ckim-vqsr	INDEL	I1_5	segdup	homalt	99.5772	99.5772	99.5772	92.8593	471	2	471	2	2	100.0000
ckim-vqsr	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.4318	98.8701	100.0000	74.3402	175	2	175	0	0
ckim-vqsr	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.5851	99.1736	100.0000	69.2994	240	2	241	0	0
ckim-vqsr	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	98.0392	96.1538	100.0000	54.0541	50	2	51	0	0
ckim-vqsr	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	het	99.1736	98.3607	100.0000	63.0435	120	2	119	0	0

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