PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
44701-44750 / 86044 show all | |||||||||||||||
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 0.0000 | 33.3333 | 0.0000 | 97.8261 | 1 | 2 | 0 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| egarrison-hhga | INDEL | I16_PLUS | map_l100_m0_e0 | * | 81.8182 | 81.8182 | 81.8182 | 85.3333 | 9 | 2 | 9 | 2 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l125_m0_e0 | * | 72.7273 | 66.6667 | 80.0000 | 90.1961 | 4 | 2 | 4 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l125_m1_e0 | het | 77.7778 | 77.7778 | 77.7778 | 89.2857 | 7 | 2 | 7 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l125_m1_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 94.7368 | 1 | 2 | 1 | 0 | 0 | ||
| egarrison-hhga | INDEL | I16_PLUS | map_l125_m2_e0 | het | 77.7778 | 77.7778 | 77.7778 | 90.1099 | 7 | 2 | 7 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l125_m2_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 96.2963 | 1 | 2 | 1 | 0 | 0 | ||
| egarrison-hhga | INDEL | I16_PLUS | map_l125_m2_e1 | het | 77.7778 | 77.7778 | 77.7778 | 90.3226 | 7 | 2 | 7 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l125_m2_e1 | homalt | 50.0000 | 33.3333 | 100.0000 | 96.2963 | 1 | 2 | 1 | 0 | 0 | ||
| egarrison-hhga | INDEL | I16_PLUS | map_l150_m1_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 93.3333 | 1 | 2 | 1 | 0 | 0 | ||
| egarrison-hhga | INDEL | I16_PLUS | map_l150_m2_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 95.4545 | 1 | 2 | 1 | 0 | 0 | ||
| egarrison-hhga | INDEL | I16_PLUS | map_l150_m2_e1 | homalt | 50.0000 | 33.3333 | 100.0000 | 95.4545 | 1 | 2 | 1 | 0 | 0 | ||
| egarrison-hhga | INDEL | I16_PLUS | segdup | * | 95.7890 | 95.7447 | 95.8333 | 93.4426 | 45 | 2 | 46 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_l100_m0_e0 | homalt | 98.5646 | 99.0385 | 98.0952 | 80.8743 | 206 | 2 | 206 | 4 | 2 | 50.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_l125_m1_e0 | homalt | 99.0854 | 99.3884 | 98.7842 | 84.1140 | 325 | 2 | 325 | 4 | 1 | 25.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_l150_m1_e0 | homalt | 98.4925 | 98.9899 | 98.0000 | 87.7301 | 196 | 2 | 196 | 4 | 1 | 25.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_l150_m2_e0 | homalt | 98.5149 | 99.0050 | 98.0296 | 89.2819 | 199 | 2 | 199 | 4 | 1 | 25.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_l150_m2_e1 | homalt | 98.5366 | 99.0196 | 98.0583 | 89.4467 | 202 | 2 | 202 | 4 | 1 | 25.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_l250_m0_e0 | * | 91.6667 | 91.6667 | 91.6667 | 98.0815 | 22 | 2 | 22 | 2 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_l250_m0_e0 | het | 86.6667 | 86.6667 | 86.6667 | 98.2639 | 13 | 2 | 13 | 2 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I6_15 | map_l150_m0_e0 | * | 85.7143 | 75.0000 | 100.0000 | 96.3190 | 6 | 2 | 6 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | map_l150_m0_e0 | het | 66.6667 | 50.0000 | 100.0000 | 98.1132 | 2 | 2 | 2 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | segdup | homalt | 97.8261 | 95.7447 | 100.0000 | 91.4773 | 45 | 2 | 45 | 0 | 0 | ||
| egarrison-hhga | SNP | * | func_cds | homalt | 99.9857 | 99.9713 | 100.0000 | 22.5036 | 6977 | 2 | 6977 | 0 | 0 | ||
| egarrison-hhga | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 83.3333 | 71.4286 | 100.0000 | 95.6140 | 5 | 2 | 5 | 0 | 0 | ||
| egarrison-hhga | SNP | * | map_l100_m0_e0 | hetalt | 90.3226 | 87.5000 | 93.3333 | 81.0127 | 14 | 2 | 14 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | * | map_l125_m0_e0 | hetalt | 87.5000 | 77.7778 | 100.0000 | 88.1356 | 7 | 2 | 7 | 0 | 0 | ||
| egarrison-hhga | SNP | * | map_l125_m1_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 78.2946 | 28 | 2 | 28 | 0 | 0 | ||
| egarrison-hhga | SNP | * | map_l125_m2_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 81.3333 | 28 | 2 | 28 | 0 | 0 | ||
| egarrison-hhga | SNP | * | map_l125_m2_e1 | hetalt | 96.5517 | 93.3333 | 100.0000 | 81.4570 | 28 | 2 | 28 | 0 | 0 | ||
| egarrison-hhga | SNP | * | map_l150_m1_e0 | hetalt | 94.7368 | 90.0000 | 100.0000 | 82.0000 | 18 | 2 | 18 | 0 | 0 | ||
| egarrison-hhga | SNP | * | map_l150_m2_e0 | hetalt | 94.7368 | 90.0000 | 100.0000 | 84.6154 | 18 | 2 | 18 | 0 | 0 | ||
| egarrison-hhga | SNP | * | map_l150_m2_e1 | hetalt | 94.7368 | 90.0000 | 100.0000 | 84.8739 | 18 | 2 | 18 | 0 | 0 | ||
| egarrison-hhga | SNP | * | map_l250_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 95.9184 | 2 | 2 | 2 | 0 | 0 | ||
| egarrison-hhga | SNP | * | map_l250_m2_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 95.0820 | 3 | 2 | 3 | 0 | 0 | ||
| egarrison-hhga | SNP | * | map_l250_m2_e1 | hetalt | 75.0000 | 60.0000 | 100.0000 | 95.0820 | 3 | 2 | 3 | 0 | 0 | ||
| egarrison-hhga | SNP | ti | func_cds | homalt | 99.9810 | 99.9621 | 100.0000 | 20.9919 | 5273 | 2 | 5273 | 0 | 0 | ||
| egarrison-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.8670 | 99.8227 | 99.9113 | 54.5565 | 1126 | 2 | 1126 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 84.2105 | 80.0000 | 88.8889 | 97.0000 | 8 | 2 | 8 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 80.0000 | 66.6667 | 100.0000 | 94.9367 | 4 | 2 | 4 | 0 | 0 | ||
| egarrison-hhga | SNP | ti | map_l100_m0_e0 | hetalt | 88.8889 | 85.7143 | 92.3077 | 77.1930 | 12 | 2 | 12 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | ti | map_l100_m1_e0 | hetalt | 94.7368 | 93.1034 | 96.4286 | 76.8595 | 27 | 2 | 27 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | ti | map_l100_m2_e0 | hetalt | 94.9153 | 93.3333 | 96.5517 | 78.9855 | 28 | 2 | 28 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | ti | map_l100_m2_e1 | hetalt | 95.0820 | 93.5484 | 96.6667 | 78.5714 | 29 | 2 | 29 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | ti | map_l125_m0_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 85.0000 | 6 | 2 | 6 | 0 | 0 | ||
| egarrison-hhga | SNP | ti | map_l125_m1_e0 | hetalt | 95.6522 | 91.6667 | 100.0000 | 75.2809 | 22 | 2 | 22 | 0 | 0 | ||
| egarrison-hhga | SNP | ti | map_l125_m2_e0 | hetalt | 95.6522 | 91.6667 | 100.0000 | 79.2453 | 22 | 2 | 22 | 0 | 0 | ||
| egarrison-hhga | SNP | ti | map_l125_m2_e1 | hetalt | 95.6522 | 91.6667 | 100.0000 | 79.4393 | 22 | 2 | 22 | 0 | 0 | ||
| egarrison-hhga | SNP | ti | map_l150_m1_e0 | hetalt | 92.8571 | 86.6667 | 100.0000 | 80.3030 | 13 | 2 | 13 | 0 | 0 | ||