PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
44451-44500 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | INDEL | D16_PLUS | map_l100_m0_e0 | het | 86.7624 | 89.4737 | 84.2105 | 95.1157 | 17 | 2 | 16 | 3 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_l125_m2_e1 | * | 91.2281 | 92.8571 | 89.6552 | 95.4474 | 26 | 2 | 26 | 3 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_l150_m2_e1 | * | 86.4865 | 88.8889 | 84.2105 | 95.2141 | 16 | 2 | 16 | 3 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | segdup | hetalt | 87.5000 | 77.7778 | 100.0000 | 91.8919 | 7 | 2 | 9 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.2248 | 99.2248 | 99.2248 | 62.6628 | 256 | 2 | 256 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 92.2581 | 12 | 2 | 12 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 91.6667 | 84.6154 | 100.0000 | 95.0673 | 11 | 2 | 11 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 92.8571 | 86.6667 | 100.0000 | 94.7791 | 13 | 2 | 13 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 92.8571 | 86.6667 | 100.0000 | 94.9219 | 13 | 2 | 13 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 83.3333 | 71.4286 | 100.0000 | 97.1429 | 5 | 2 | 5 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 83.3333 | 71.4286 | 100.0000 | 97.3958 | 5 | 2 | 5 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 85.7143 | 75.0000 | 100.0000 | 96.9849 | 6 | 2 | 6 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 98.8043 | 99.9450 | 97.6894 | 60.7922 | 3636 | 2 | 3636 | 86 | 84 | 97.6744 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 96.8750 | 93.9394 | 100.0000 | 61.9048 | 31 | 2 | 32 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.6475 | 99.7647 | 99.5305 | 49.7048 | 848 | 2 | 848 | 4 | 4 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 94.4444 | 89.4737 | 100.0000 | 76.7123 | 17 | 2 | 17 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | map_l125_m0_e0 | * | 97.8261 | 95.7447 | 100.0000 | 91.1417 | 45 | 2 | 45 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 94.4444 | 89.4737 | 100.0000 | 79.2683 | 17 | 2 | 17 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | map_l125_m2_e0 | hetalt | 94.4444 | 89.4737 | 100.0000 | 81.5217 | 17 | 2 | 17 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | map_l150_m1_e0 | * | 98.6111 | 97.2603 | 100.0000 | 89.8281 | 71 | 2 | 71 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | map_l150_m2_e0 | het | 97.7778 | 95.6522 | 100.0000 | 91.0751 | 44 | 2 | 44 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | map_l150_m2_e1 | het | 97.8261 | 95.7447 | 100.0000 | 91.0180 | 45 | 2 | 45 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | map_l150_m2_e1 | hetalt | 87.5000 | 77.7778 | 100.0000 | 89.2308 | 7 | 2 | 7 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | func_cds | * | 90.9091 | 83.3333 | 100.0000 | 72.2222 | 10 | 2 | 10 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 96.8974 | 99.0244 | 94.8598 | 89.7066 | 203 | 2 | 203 | 11 | 9 | 81.8182 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 96.8974 | 99.0244 | 94.8598 | 89.7066 | 203 | 2 | 203 | 11 | 9 | 81.8182 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 50.0000 | 50.0000 | 50.0000 | 83.3333 | 2 | 2 | 2 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 96.8185 | 95.7447 | 97.9167 | 79.0393 | 45 | 2 | 47 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 96.2963 | 92.8571 | 100.0000 | 60.0000 | 26 | 2 | 28 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 66.6667 | 50.0000 | 100.0000 | 81.8182 | 2 | 2 | 2 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| raldana-dualsentieon | INDEL | I16_PLUS | map_l100_m1_e0 | het | 94.1176 | 88.8889 | 100.0000 | 90.6977 | 16 | 2 | 16 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | map_l100_m2_e0 | het | 94.1176 | 88.8889 | 100.0000 | 92.3810 | 16 | 2 | 16 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | map_l100_m2_e1 | het | 94.1176 | 88.8889 | 100.0000 | 92.4528 | 16 | 2 | 16 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | map_l125_m1_e0 | * | 92.8571 | 86.6667 | 100.0000 | 93.9815 | 13 | 2 | 13 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | map_l125_m2_e0 | * | 89.6552 | 86.6667 | 92.8571 | 94.6970 | 13 | 2 | 13 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | map_l125_m2_e1 | * | 89.6552 | 86.6667 | 92.8571 | 94.7170 | 13 | 2 | 13 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.8175 | 99.6357 | 100.0000 | 79.6654 | 547 | 2 | 547 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.5318 | 99.8122 | 99.2530 | 67.9437 | 1063 | 2 | 1063 | 8 | 8 | 100.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 93.8776 | 92.0000 | 95.8333 | 53.8462 | 23 | 2 | 23 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 95.4545 | 91.3043 | 100.0000 | 8.6957 | 21 | 2 | 21 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I1_5 | map_l250_m1_e0 | homalt | 96.5517 | 95.4545 | 97.6744 | 93.4947 | 42 | 2 | 42 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l250_m2_e0 | homalt | 96.6292 | 95.5556 | 97.7273 | 94.5342 | 43 | 2 | 43 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l250_m2_e1 | homalt | 96.7033 | 95.6522 | 97.7778 | 94.5718 | 44 | 2 | 44 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | segdup | homalt | 99.4720 | 99.5772 | 99.3671 | 92.4798 | 471 | 2 | 471 | 3 | 3 | 100.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | func_cds | * | 97.6190 | 95.3488 | 100.0000 | 38.8060 | 41 | 2 | 41 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.1736 | 98.3607 | 100.0000 | 68.7500 | 120 | 2 | 120 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 77.7778 | 100.0000 | 7 | 2 | 0 | 0 | 0 | ||||
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 91.6667 | 84.6154 | 100.0000 | 70.2703 | 11 | 2 | 11 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 90.9091 | 83.3333 | 100.0000 | 38.8889 | 10 | 2 | 11 | 0 | 0 | ||