PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
44401-44450 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l250_m2_e1 | het | 50.0000 | 33.3333 | 100.0000 | 99.5575 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | tech_badpromoters | * | 66.6667 | 50.0000 | 100.0000 | 50.0000 | 2 | 2 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | tech_badpromoters | het | 66.6667 | 50.0000 | 100.0000 | 0.0000 | 2 | 2 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 83.3333 | 71.4286 | 100.0000 | 99.7405 | 5 | 2 | 5 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | map_l250_m1_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 99.6139 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | map_l250_m2_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 99.6587 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | map_l250_m2_e1 | hetalt | 50.0000 | 33.3333 | 100.0000 | 99.6656 | 1 | 2 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | map_l150_m0_e0 | * | 82.9787 | 75.0000 | 92.8571 | 92.6316 | 6 | 2 | 13 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | map_l150_m0_e0 | het | 63.1579 | 50.0000 | 85.7143 | 93.1373 | 2 | 2 | 6 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | map_l250_m1_e0 | * | 83.3333 | 71.4286 | 100.0000 | 93.5323 | 5 | 2 | 13 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | map_l250_m1_e0 | het | 66.6667 | 50.0000 | 100.0000 | 95.1923 | 2 | 2 | 5 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | map_l250_m2_e0 | * | 85.7143 | 75.0000 | 100.0000 | 92.6606 | 6 | 2 | 16 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | map_l250_m2_e0 | het | 75.0000 | 60.0000 | 100.0000 | 95.4128 | 3 | 2 | 5 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | map_l250_m2_e1 | * | 85.7143 | 75.0000 | 100.0000 | 92.8571 | 6 | 2 | 16 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | map_l250_m2_e1 | het | 75.0000 | 60.0000 | 100.0000 | 95.6140 | 3 | 2 | 5 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | tech_badpromoters | * | 91.6667 | 84.6154 | 100.0000 | 47.8261 | 11 | 2 | 12 | 0 | 0 | ||
| eyeh-varpipe | SNP | * | func_cds | homalt | 99.9857 | 99.9713 | 100.0000 | 21.9335 | 6977 | 2 | 6880 | 0 | 0 | ||
| eyeh-varpipe | SNP | * | map_l250_m0_e0 | homalt | 99.6776 | 99.6820 | 99.6732 | 93.5320 | 627 | 2 | 610 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | SNP | ti | func_cds | homalt | 99.9810 | 99.9621 | 100.0000 | 20.7688 | 5273 | 2 | 5215 | 0 | 0 | ||
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.7733 | 99.9091 | 99.6378 | 40.5384 | 2199 | 2 | 2201 | 8 | 4 | 50.0000 | |
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 94.2388 | 99.8503 | 89.2244 | 68.0061 | 1334 | 2 | 1300 | 157 | 4 | 2.5478 | |
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.5789 | 99.5842 | 99.5736 | 56.7742 | 479 | 2 | 467 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 95.6922 | 99.9080 | 91.8178 | 68.6059 | 2172 | 2 | 2076 | 185 | 3 | 1.6216 | |
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.6073 | 99.7455 | 99.4695 | 62.0342 | 784 | 2 | 750 | 4 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 96.2658 | 99.8611 | 92.9204 | 71.7174 | 1438 | 2 | 1365 | 104 | 1 | 0.9615 | |
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.5100 | 99.6190 | 99.4012 | 66.6667 | 523 | 2 | 498 | 3 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | map_l250_m0_e0 | homalt | 99.2221 | 98.9637 | 99.4819 | 94.6493 | 191 | 2 | 192 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | * | func_cds | hetalt | 54.5455 | 60.0000 | 50.0000 | 50.0000 | 3 | 2 | 1 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 90.9091 | 83.3333 | 100.0000 | 99.4632 | 10 | 2 | 11 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 33.3333 | 100.0000 | 1 | 2 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 33.3333 | 100.0000 | 1 | 2 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 44.4444 | 50.0000 | 40.0000 | 99.5759 | 2 | 2 | 2 | 3 | 2 | 66.6667 | |
| gduggal-bwafb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 50.0000 | 33.3333 | 100.0000 | 98.7654 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | map_l125_m0_e0 | hetalt | 90.0000 | 81.8182 | 100.0000 | 97.4194 | 9 | 2 | 4 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | map_l150_m0_e0 | homalt | 98.4802 | 98.7805 | 98.1818 | 92.3823 | 162 | 2 | 162 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | * | map_l250_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 97.7941 | 4 | 2 | 3 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | map_l250_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.1707 | 4 | 2 | 3 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | map_l250_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.2036 | 4 | 2 | 3 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D16_PLUS | func_cds | het | 75.0000 | 75.0000 | 75.0000 | 52.9412 | 6 | 2 | 6 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | func_cds | homalt | 66.6667 | 50.0000 | 100.0000 | 50.0000 | 2 | 2 | 2 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 96.2963 | 0 | 2 | 0 | 1 | 1 | 100.0000 | ||
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 96.2963 | 0 | 2 | 0 | 1 | 1 | 100.0000 | ||
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 71.8310 | 89.4737 | 60.0000 | 70.5882 | 17 | 2 | 3 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | HG002complexvar | homalt | 98.7952 | 99.3080 | 98.2877 | 75.4415 | 287 | 2 | 287 | 5 | 4 | 80.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.6714 | 99.7807 | 99.5624 | 68.6019 | 910 | 2 | 910 | 4 | 3 | 75.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 96.7985 | 99.2278 | 94.4853 | 59.5238 | 257 | 2 | 257 | 15 | 14 | 93.3333 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.8252 | 99.7211 | 97.9452 | 60.2829 | 715 | 2 | 715 | 15 | 14 | 93.3333 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.6236 | 99.4987 | 99.7487 | 64.4007 | 397 | 2 | 397 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 98.0000 | 96.0784 | 100.0000 | 23.8806 | 49 | 2 | 51 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 78.9474 | 75.0000 | 83.3333 | 88.4615 | 6 | 2 | 5 | 1 | 1 | 100.0000 | |