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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 856 857 858 859 860 861 862 863 864 ... 1720 1721 » 42951-43000 / 86044 show all
hfeng-pmm2	INDEL	I16_PLUS	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	96.2963	92.8571	100.0000	61.6438	26	2	28	0	0
hfeng-pmm2	INDEL	I16_PLUS	lowcmp_SimpleRepeat_triTR_51to200	*	66.6667	50.0000	100.0000	85.7143	2	2	2	0	0
hfeng-pmm2	INDEL	I16_PLUS	lowcmp_SimpleRepeat_triTR_51to200	het		0.0000		100.0000	0	2	0	0	0
hfeng-pmm2	INDEL	I16_PLUS	map_l100_m1_e0	*	94.1176	92.3077	96.0000	95.1644	24	2	24	1	0	0.0000
hfeng-pmm2	INDEL	I16_PLUS	map_l100_m2_e0	*	92.3077	92.3077	92.3077	95.7025	24	2	24	2	0	0.0000
hfeng-pmm2	INDEL	I16_PLUS	map_l100_m2_e1	*	92.3077	92.3077	92.3077	95.7237	24	2	24	2	0	0.0000
hfeng-pmm2	INDEL	I1_5	HG002compoundhet	homalt	80.1471	99.3921	67.1458	86.0378	327	2	327	160	159	99.3750
hfeng-pmm2	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.7265	99.6357	99.8175	80.6223	547	2	547	1	0	0.0000
hfeng-pmm2	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	98.3051	96.6667	100.0000	81.6456	58	2	58	0	0
hfeng-pmm2	INDEL	I1_5	map_l100_m1_e0	hetalt	97.6744	95.4545	100.0000	88.7701	42	2	42	0	0
hfeng-pmm2	INDEL	I1_5	map_l100_m2_e0	hetalt	97.6744	95.4545	100.0000	89.7810	42	2	42	0	0
hfeng-pmm2	INDEL	I1_5	map_l100_m2_e1	hetalt	97.7273	95.5556	100.0000	89.7619	43	2	43	0	0
hfeng-pmm2	INDEL	I1_5	map_l250_m0_e0	*	93.6170	91.6667	95.6522	98.1023	22	2	22	1	1	100.0000
hfeng-pmm2	INDEL	I1_5	map_l250_m0_e0	het	92.8571	86.6667	100.0000	98.5426	13	2	13	0	0
hfeng-pmm2	INDEL	I1_5	segdup	homalt	99.5772	99.5772	99.5772	92.4837	471	2	471	2	2	100.0000
hfeng-pmm2	INDEL	I6_15	HG002complexvar	homalt	98.4965	99.8353	97.1933	55.2244	1212	2	1212	35	35	100.0000
hfeng-pmm2	INDEL	I6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	91.9355	96.6102	87.6923	76.1029	57	2	57	8	8	100.0000
hfeng-pmm2	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.1736	98.3607	100.0000	70.2970	120	2	120	0	0
hfeng-pmm2	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	98.0392	96.1538	100.0000	59.8425	50	2	51	0	0
hfeng-pmm2	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	86.2745	91.6667	81.4815	79.3893	22	2	22	5	5	100.0000
hfeng-pmm2	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_51to200	het		77.7778		100.0000	7	2	0	0	0
hfeng-pmm2	INDEL	I6_15	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	97.6744	95.4545	100.0000	75.8621	42	2	42	0	0
hfeng-pmm2	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	het	99.1736	98.3607	100.0000	59.3857	120	2	119	0	0
hfeng-pmm2	INDEL	I6_15	map_l100_m1_e0	hetalt	95.2381	90.9091	100.0000	83.1933	20	2	20	0	0
hfeng-pmm2	INDEL	I6_15	map_l100_m2_e0	hetalt	95.2381	90.9091	100.0000	84.7328	20	2	20	0	0
hfeng-pmm2	INDEL	I6_15	map_l100_m2_e1	hetalt	95.2381	90.9091	100.0000	85.1852	20	2	20	0	0
hfeng-pmm2	INDEL	I6_15	map_l150_m0_e0	*	80.0000	75.0000	85.7143	96.7136	6	2	6	1	1	100.0000
hfeng-pmm2	INDEL	I6_15	map_l250_m1_e0	het	57.1429	50.0000	66.6667	98.1250	2	2	2	1	1	100.0000
hfeng-pmm2	INDEL	I6_15	map_l250_m2_e0	het	66.6667	60.0000	75.0000	97.7401	3	2	3	1	1	100.0000
hfeng-pmm2	INDEL	I6_15	map_l250_m2_e1	het	66.6667	60.0000	75.0000	97.8610	3	2	3	1	1	100.0000
hfeng-pmm2	INDEL	I6_15	segdup	hetalt	97.7273	95.5556	100.0000	90.1376	43	2	43	0	0
hfeng-pmm2	SNP	*	*	hetalt	99.8851	99.7704	100.0000	49.0323	869	2	869	0	0
hfeng-pmm2	SNP	*	HG002complexvar	hetalt	99.6764	99.3548	100.0000	39.9610	308	2	308	0	0
hfeng-pmm2	SNP	*	HG002compoundhet	hetalt	99.8839	99.7680	100.0000	23.2143	860	2	860	0	0
hfeng-pmm2	SNP	*	lowcmp_SimpleRepeat_diTR_51to200	homalt	92.8571	86.6667	100.0000	96.7005	13	2	13	0	0
hfeng-pmm2	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9754	99.9671	99.9836	54.9478	6086	2	6086	1	1	100.0000
hfeng-pmm2	SNP	*	lowcmp_SimpleRepeat_quadTR_51to200	homalt	95.1220	95.1220	95.1220	93.7785	39	2	39	2	1	50.0000
hfeng-pmm2	SNP	*	tech_badpromoters	*	98.7261	98.7261	98.7261	47.3154	155	2	155	2	2	100.0000
hfeng-pmm2	SNP	*	tech_badpromoters	het	98.6842	97.4026	100.0000	44.8529	75	2	75	0	0
hfeng-pmm2	SNP	ti	*	hetalt	99.8279	99.6564	100.0000	47.9821	580	2	580	0	0
hfeng-pmm2	SNP	ti	HG002complexvar	hetalt	99.5146	99.0338	100.0000	39.5280	205	2	205	0	0
hfeng-pmm2	SNP	ti	HG002compoundhet	hetalt	99.8270	99.6546	100.0000	22.7577	577	2	577	0	0
hfeng-pmm2	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.7382	99.4778	100.0000	83.7872	381	2	381	0	0
hfeng-pmm2	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.9407	99.8815	100.0000	65.8566	1686	2	1686	0	0
hfeng-pmm2	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9318	99.9091	99.9545	42.7232	2199	2	2199	1	1	100.0000
hfeng-pmm2	SNP	ti	lowcmp_SimpleRepeat_quadTR_51to200	homalt	97.0588	94.2857	100.0000	94.0325	33	2	33	0	0
hfeng-pmm2	SNP	tv	*	hetalt	99.8851	99.7704	100.0000	49.0323	869	2	869	0	0
hfeng-pmm2	SNP	tv	HG002complexvar	hetalt	99.6764	99.3548	100.0000	39.9610	308	2	308	0	0
hfeng-pmm2	SNP	tv	HG002compoundhet	hetalt	99.8839	99.7680	100.0000	23.2143	860	2	860	0	0
hfeng-pmm2	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.6183	99.6183	99.6183	69.2308	522	2	522	2	1	50.0000

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