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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 855 856 857 858 859 860 861 862 863 ... 1720 1721 » 42901-42950 / 86044 show all
hfeng-pmm1	INDEL	I16_PLUS	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	96.2963	92.8571	100.0000	61.1111	26	2	28	0	0
hfeng-pmm1	INDEL	I16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	het	98.2107	98.8095	97.6190	76.5363	166	2	164	4	0	0.0000
hfeng-pmm1	INDEL	I16_PLUS	lowcmp_SimpleRepeat_triTR_51to200	*	66.6667	50.0000	100.0000	84.6154	2	2	2	0	0
hfeng-pmm1	INDEL	I16_PLUS	lowcmp_SimpleRepeat_triTR_51to200	het		0.0000		100.0000	0	2	0	0	0
hfeng-pmm1	INDEL	I16_PLUS	map_l100_m1_e0	*	92.3077	92.3077	92.3077	94.7581	24	2	24	2	0	0.0000
hfeng-pmm1	INDEL	I16_PLUS	map_l100_m2_e0	*	92.3077	92.3077	92.3077	95.4783	24	2	24	2	0	0.0000
hfeng-pmm1	INDEL	I16_PLUS	map_l100_m2_e1	*	92.3077	92.3077	92.3077	95.5017	24	2	24	2	0	0.0000
hfeng-pmm1	INDEL	I16_PLUS	map_siren	het	94.0000	95.9184	92.1569	90.3774	47	2	47	4	0	0.0000
hfeng-pmm1	INDEL	I1_5	HG002compoundhet	homalt	83.5249	99.3921	72.0264	83.4186	327	2	327	127	126	99.2126
hfeng-pmm1	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.8428	99.7906	99.8952	79.6675	953	2	953	1	0	0.0000
hfeng-pmm2	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.5839	99.4460	99.7222	61.9048	359	2	359	1	1	100.0000
hfeng-pmm2	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.6236	99.4987	99.7487	63.6197	397	2	397	1	1	100.0000
hfeng-pmm2	INDEL	D16_PLUS	lowcmp_SimpleRepeat_homopolymer_6to10	*	98.2659	97.7011	98.8372	82.5911	85	2	85	1	0	0.0000
hfeng-pmm2	INDEL	D16_PLUS	lowcmp_SimpleRepeat_homopolymer_6to10	het	97.0273	96.1538	97.9167	85.1852	50	2	47	1	0	0.0000
hfeng-pmm2	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_11to50	*	98.7261	98.7261	98.7261	63.8249	155	2	155	2	1	50.0000
hfeng-pmm2	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_11to50	hetalt	98.0000	96.0784	100.0000	22.7273	49	2	51	0	0
hfeng-pmm2	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_51to200	het	78.9474	75.0000	83.3333	88.4615	6	2	5	1	1	100.0000
hfeng-pmm2	INDEL	D16_PLUS	map_l100_m0_e0	*	85.2459	92.8571	78.7879	95.5041	26	2	26	7	0	0.0000
hfeng-pmm2	INDEL	D16_PLUS	map_l100_m1_e0	het	88.7014	95.6522	82.6923	94.6776	44	2	43	9	3	33.3333
hfeng-pmm2	INDEL	D16_PLUS	map_l100_m2_e0	het	88.0766	95.8333	81.4815	95.2590	46	2	44	10	3	30.0000
hfeng-pmm2	INDEL	D16_PLUS	map_l100_m2_e1	het	88.7476	96.0784	82.4561	95.1199	49	2	47	10	3	30.0000
hfeng-pmm2	INDEL	D16_PLUS	map_siren	homalt	90.1408	94.1176	86.4865	92.8295	32	2	32	5	0	0.0000
hfeng-pmm2	INDEL	D16_PLUS	segdup	*	94.9153	96.5517	93.3333	95.9541	56	2	56	4	0	0.0000
hfeng-pmm2	INDEL	D16_PLUS	segdup	hetalt	87.5000	77.7778	100.0000	93.0233	7	2	9	0	0
hfeng-pmm2	INDEL	D1_5	HG002compoundhet	homalt	89.0601	99.3127	80.7263	78.1840	289	2	289	69	69	100.0000
hfeng-pmm2	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.6109	99.2248	100.0000	61.7910	256	2	256	0	0
hfeng-pmm2	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_51to200	homalt	98.9848	98.9848	98.9848	56.8928	195	2	195	2	2	100.0000
hfeng-pmm2	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.7831	99.5671	100.0000	29.5559	460	2	460	0	0
hfeng-pmm2	INDEL	D1_5	map_l100_m0_e0	hetalt	92.3077	85.7143	100.0000	94.1176	12	2	12	0	0
hfeng-pmm2	INDEL	D1_5	map_l125_m1_e0	homalt	99.4269	99.4269	99.4269	83.7068	347	2	347	2	2	100.0000
hfeng-pmm2	INDEL	D1_5	map_l125_m2_e0	homalt	99.4505	99.4505	99.4505	84.6219	362	2	362	2	2	100.0000
hfeng-pmm2	INDEL	D1_5	map_l125_m2_e1	homalt	99.4624	99.4624	99.4624	84.6217	370	2	370	2	2	100.0000
hfeng-pmm2	INDEL	D1_5	map_l150_m0_e0	*	97.4608	99.3080	95.6811	91.3754	287	2	288	13	1	7.6923
hfeng-pmm2	INDEL	D1_5	map_l150_m0_e0	het	96.6323	99.0099	94.3662	91.7951	200	2	201	12	0	0.0000
hfeng-pmm2	INDEL	D1_5	map_l150_m1_e0	homalt	99.3407	99.1228	99.5595	86.2424	226	2	226	1	1	100.0000
hfeng-pmm2	INDEL	D1_5	map_l150_m2_e0	homalt	99.3789	99.1736	99.5851	87.0500	240	2	240	1	1	100.0000
hfeng-pmm2	INDEL	D1_5	map_l150_m2_e1	homalt	99.1935	99.1935	99.1935	86.9679	246	2	246	2	2	100.0000
hfeng-pmm2	INDEL	D1_5	segdup	hetalt	98.0392	96.1538	100.0000	95.6780	50	2	51	0	0
hfeng-pmm2	INDEL	D6_15	HG002complexvar	homalt	99.4885	99.8289	99.1504	61.5359	1167	2	1167	10	9	90.0000
hfeng-pmm2	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.7647	99.7647	99.7647	48.5783	848	2	848	2	2	100.0000
hfeng-pmm2	INDEL	D6_15	map_l100_m1_e0	het	97.2549	98.4127	96.1240	88.6544	124	2	124	5	1	20.0000
hfeng-pmm2	INDEL	D6_15	map_l125_m1_e0	het	98.4127	96.8750	100.0000	91.8954	62	2	62	0	0
hfeng-pmm2	INDEL	D6_15	map_l125_m1_e0	hetalt	94.4444	89.4737	100.0000	85.3448	17	2	17	0	0
hfeng-pmm2	INDEL	D6_15	map_l125_m2_e0	hetalt	94.4444	89.4737	100.0000	87.3134	17	2	17	0	0
hfeng-pmm2	INDEL	D6_15	map_l150_m2_e1	*	98.8095	97.6471	100.0000	92.0115	83	2	83	0	0
hfeng-pmm2	INDEL	D6_15	tech_badpromoters	*	93.7500	88.2353	100.0000	50.0000	15	2	15	0	0
hfeng-pmm2	INDEL	D6_15	tech_badpromoters	het	88.8889	80.0000	100.0000	52.9412	8	2	8	0	0
hfeng-pmm2	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.0654	98.1481	100.0000	79.5276	106	2	104	0	0
hfeng-pmm2	INDEL	I16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	hetalt	0.0000	0.0000	100.0000	85.7143	0	2	1	0	0
hfeng-pmm2	INDEL	I16_PLUS	lowcmp_SimpleRepeat_homopolymer_6to10	*	95.8314	95.7447	95.9184	80.0813	45	2	47	2	2	100.0000

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