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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 854 855 856 857 858 859 860 861 862 ... 1720 1721 » 42851-42900 / 86044 show all
hfeng-pmm3	SNP	ti	HG002compoundhet	hetalt	99.8270	99.6546	100.0000	22.4462	577	2	577	0	0
hfeng-pmm3	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.9317	99.8636	100.0000	45.3935	1464	2	1464	0	0
hfeng-pmm3	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.7382	99.4778	100.0000	82.6739	381	2	381	0	0
hfeng-pmm3	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.9407	99.8815	100.0000	64.4454	1686	2	1686	0	0
hfeng-pmm3	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9318	99.9091	99.9545	42.3026	2199	2	2199	1	1	100.0000
hfeng-pmm3	SNP	tv	*	hetalt	99.8277	99.7704	99.8851	46.7890	869	2	869	1	1	100.0000
hfeng-pmm3	SNP	tv	HG002complexvar	hetalt	99.6764	99.3548	100.0000	37.5254	308	2	308	0	0
hfeng-pmm3	SNP	tv	HG002compoundhet	hetalt	99.8839	99.7680	100.0000	22.8700	860	2	860	0	0
hfeng-pmm3	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.7135	99.6183	99.8088	66.4313	522	2	522	1	1	100.0000
hfeng-pmm3	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	97.5000	95.1220	100.0000	91.6488	39	2	39	0	0
hfeng-pmm1	INDEL	*	map_l150_m2_e1	hetalt	95.4545	91.3043	100.0000	95.5414	21	2	21	0	0
hfeng-pmm1	INDEL	*	segdup	homalt	99.6878	99.7917	99.5842	93.1783	958	2	958	4	4	100.0000
hfeng-pmm1	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.4934	99.5943	99.3927	55.2131	491	2	491	3	0	0.0000
hfeng-pmm1	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.2565	99.2593	99.2537	60.8759	268	2	266	2	0	0.0000
hfeng-pmm1	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.7831	99.5671	100.0000	57.2491	460	2	460	0	0
hfeng-pmm1	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.3464	99.1304	99.5633	66.6181	228	2	228	1	1	100.0000
hfeng-pmm1	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_11to50	*	98.4127	98.7261	98.1013	62.9977	155	2	155	3	1	33.3333
hfeng-pmm1	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_11to50	hetalt	98.0000	96.0784	100.0000	23.8806	49	2	51	0	0
hfeng-pmm1	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_51to200	het	78.9474	75.0000	83.3333	88.8889	6	2	5	1	1	100.0000
hfeng-pmm1	INDEL	D16_PLUS	map_l100_m0_e0	*	86.6667	92.8571	81.2500	94.6932	26	2	26	6	0	0.0000
hfeng-pmm1	INDEL	D16_PLUS	map_l100_m1_e0	het	90.5697	95.6522	86.0000	93.7578	44	2	43	7	2	28.5714
hfeng-pmm1	INDEL	D16_PLUS	map_l100_m2_e0	het	89.8757	95.8333	84.6154	94.4622	46	2	44	8	2	25.0000
hfeng-pmm1	INDEL	D16_PLUS	map_l100_m2_e1	het	90.4556	96.0784	85.4545	94.3123	49	2	47	8	2	25.0000
hfeng-pmm1	INDEL	D16_PLUS	map_siren	homalt	91.4286	94.1176	88.8889	91.7051	32	2	32	4	0	0.0000
hfeng-pmm1	INDEL	D16_PLUS	segdup	*	94.9153	96.5517	93.3333	95.3811	56	2	56	4	0	0.0000
hfeng-pmm1	INDEL	D16_PLUS	segdup	hetalt	87.5000	77.7778	100.0000	92.8571	7	2	9	0	0
hfeng-pmm1	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.6109	99.2248	100.0000	61.6192	256	2	256	0	0
hfeng-pmm1	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	98.6301	97.2973	100.0000	81.3953	72	2	72	0	0
hfeng-pmm1	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.8165	99.6337	100.0000	76.1717	544	2	544	0	0
hfeng-pmm1	INDEL	D1_5	map_l100_m0_e0	hetalt	92.3077	85.7143	100.0000	94.0887	12	2	12	0	0
hfeng-pmm1	INDEL	D1_5	map_l100_m0_e0	homalt	99.4175	99.2248	99.6109	81.1722	256	2	256	1	1	100.0000
hfeng-pmm1	INDEL	D1_5	map_l125_m0_e0	homalt	98.9831	98.6486	99.3197	85.1215	146	2	146	1	1	100.0000
hfeng-pmm1	INDEL	D1_5	map_l250_m0_e0	*	96.7033	95.6522	97.7778	96.2993	44	2	44	1	0	0.0000
hfeng-pmm1	INDEL	D1_5	map_l250_m0_e0	het	95.3846	93.9394	96.8750	95.8333	31	2	31	1	0	0.0000
hfeng-pmm1	INDEL	D1_5	map_l250_m1_e0	homalt	98.2143	96.4912	100.0000	93.1592	55	2	55	0	0
hfeng-pmm1	INDEL	D1_5	map_l250_m2_e0	homalt	98.3051	96.6667	100.0000	93.7433	58	2	58	0	0
hfeng-pmm1	INDEL	D1_5	map_l250_m2_e1	homalt	98.3051	96.6667	100.0000	93.9012	58	2	58	0	0
hfeng-pmm1	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	98.1481	96.3636	100.0000	63.2653	53	2	54	0	0
hfeng-pmm1	INDEL	D6_15	map_l100_m1_e0	homalt	98.4127	96.8750	100.0000	83.3333	62	2	62	0	0
hfeng-pmm1	INDEL	D6_15	map_l100_m2_e0	homalt	98.4375	96.9231	100.0000	84.0102	63	2	63	0	0
hfeng-pmm1	INDEL	D6_15	map_l100_m2_e1	homalt	98.4848	97.0149	100.0000	83.9901	65	2	65	0	0
hfeng-pmm1	INDEL	D6_15	map_l125_m2_e1	hetalt	94.7368	90.0000	100.0000	87.4126	18	2	18	0	0
hfeng-pmm1	INDEL	D6_15	map_l150_m1_e0	*	98.6111	97.2603	100.0000	90.0421	71	2	71	0	0
hfeng-pmm1	INDEL	D6_15	map_l150_m2_e0	*	98.7654	97.5610	100.0000	90.1599	80	2	80	0	0
hfeng-pmm1	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	97.3621	99.0244	95.7547	90.6402	203	2	203	9	7	77.7778
hfeng-pmm1	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.4350	98.8764	100.0000	80.0454	176	2	176	0	0
hfeng-pmm1	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.0654	98.1481	100.0000	79.0744	106	2	104	0	0
hfeng-pmm1	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	97.3621	99.0244	95.7547	90.6402	203	2	203	9	7	77.7778
hfeng-pmm1	INDEL	I16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	*	50.0000	50.0000	50.0000	86.6667	2	2	2	2	0	0.0000
hfeng-pmm1	INDEL	I16_PLUS	lowcmp_SimpleRepeat_homopolymer_6to10	*	95.8314	95.7447	95.9184	80.1619	45	2	47	2	2	100.0000

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