PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
42601-42650 / 86044 show all | |||||||||||||||
| jlack-gatk | INDEL | D16_PLUS | map_l125_m1_e0 | het | 92.6829 | 95.0000 | 90.4762 | 97.1583 | 19 | 1 | 19 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l125_m1_e0 | hetalt | 66.6667 | 66.6667 | 66.6667 | 92.1053 | 2 | 1 | 2 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l125_m2_e0 | het | 92.6829 | 95.0000 | 90.4762 | 97.6000 | 19 | 1 | 19 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l125_m2_e0 | hetalt | 66.6667 | 66.6667 | 66.6667 | 92.5000 | 2 | 1 | 2 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l125_m2_e1 | het | 92.6829 | 95.0000 | 90.4762 | 97.6510 | 19 | 1 | 19 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l150_m1_e0 | * | 84.8485 | 93.3333 | 77.7778 | 97.3451 | 14 | 1 | 14 | 4 | 1 | 25.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 96.6667 | 0 | 1 | 0 | 1 | 0 | 0.0000 | ||
| jlack-gatk | INDEL | D16_PLUS | map_l150_m2_e0 | * | 86.4865 | 94.1176 | 80.0000 | 97.4843 | 16 | 1 | 16 | 4 | 1 | 25.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 96.6667 | 0 | 1 | 0 | 1 | 0 | 0.0000 | ||
| jlack-gatk | INDEL | D16_PLUS | map_l250_m1_e0 | * | 60.0000 | 75.0000 | 50.0000 | 98.1763 | 3 | 1 | 3 | 3 | 1 | 33.3333 | |
| jlack-gatk | INDEL | D16_PLUS | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| jlack-gatk | INDEL | D16_PLUS | map_l250_m2_e0 | * | 66.6667 | 80.0000 | 57.1429 | 98.2278 | 4 | 1 | 4 | 3 | 1 | 33.3333 | |
| jlack-gatk | INDEL | D16_PLUS | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| jlack-gatk | INDEL | D16_PLUS | map_l250_m2_e1 | * | 66.6667 | 80.0000 | 57.1429 | 98.2412 | 4 | 1 | 4 | 3 | 1 | 33.3333 | |
| jlack-gatk | INDEL | D16_PLUS | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| jlack-gatk | INDEL | D1_5 | HG002compoundhet | homalt | 69.2124 | 99.6564 | 53.0165 | 77.8632 | 290 | 1 | 290 | 257 | 257 | 100.0000 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7255 | 99.8168 | 99.6344 | 77.0842 | 545 | 1 | 545 | 2 | 1 | 50.0000 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 97.7556 | 99.4924 | 96.0784 | 58.9537 | 196 | 1 | 196 | 8 | 8 | 100.0000 | |
| jlack-gatk | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 96.0000 | 92.3077 | 100.0000 | 95.9044 | 12 | 1 | 12 | 0 | 0 | ||
| jlack-gatk | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 97.4895 | 6 | 1 | 6 | 0 | 0 | ||
| jlack-gatk | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 97.7612 | 6 | 1 | 6 | 0 | 0 | ||
| jlack-gatk | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 93.3333 | 87.5000 | 100.0000 | 97.4359 | 7 | 1 | 7 | 0 | 0 | ||
| jlack-gatk | INDEL | D1_5 | map_l250_m1_e0 | homalt | 99.1150 | 98.2456 | 100.0000 | 93.7916 | 56 | 1 | 56 | 0 | 0 | ||
| jlack-gatk | INDEL | D1_5 | map_l250_m2_e0 | homalt | 99.1597 | 98.3333 | 100.0000 | 94.2774 | 59 | 1 | 59 | 0 | 0 | ||
| jlack-gatk | INDEL | D1_5 | map_l250_m2_e1 | homalt | 99.1597 | 98.3333 | 100.0000 | 94.4497 | 59 | 1 | 59 | 0 | 0 | ||
| jlack-gatk | INDEL | D1_5 | segdup | homalt | 99.5828 | 99.7214 | 99.4444 | 94.1766 | 358 | 1 | 358 | 2 | 2 | 100.0000 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 83.3333 | 83.3333 | 83.3333 | 99.7121 | 5 | 1 | 5 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l100_m0_e0 | homalt | 97.8723 | 95.8333 | 100.0000 | 89.0995 | 23 | 1 | 23 | 0 | 0 | ||
| jlack-gatk | INDEL | D6_15 | map_l100_m1_e0 | homalt | 99.2126 | 98.4375 | 100.0000 | 85.0000 | 63 | 1 | 63 | 0 | 0 | ||
| jlack-gatk | INDEL | D6_15 | map_l100_m2_e0 | homalt | 99.2248 | 98.4615 | 100.0000 | 85.7143 | 64 | 1 | 64 | 0 | 0 | ||
| jlack-gatk | INDEL | D6_15 | map_l100_m2_e1 | homalt | 97.7778 | 98.5075 | 97.0588 | 85.2495 | 66 | 1 | 66 | 2 | 2 | 100.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l125_m0_e0 | het | 87.5000 | 96.5517 | 80.0000 | 94.8830 | 28 | 1 | 28 | 7 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l125_m0_e0 | hetalt | 83.3333 | 83.3333 | 83.3333 | 90.0000 | 5 | 1 | 5 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l150_m1_e0 | het | 90.4762 | 97.4359 | 84.4444 | 95.1665 | 38 | 1 | 38 | 7 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l150_m1_e0 | hetalt | 87.5000 | 87.5000 | 87.5000 | 90.6977 | 7 | 1 | 7 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l150_m2_e0 | het | 91.8367 | 97.8261 | 86.5385 | 95.0617 | 45 | 1 | 45 | 7 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l150_m2_e0 | hetalt | 87.5000 | 87.5000 | 87.5000 | 91.4894 | 7 | 1 | 7 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l150_m2_e1 | het | 92.0000 | 97.8723 | 86.7925 | 95.0789 | 46 | 1 | 46 | 7 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l250_m1_e0 | * | 89.4737 | 94.4444 | 85.0000 | 97.2452 | 17 | 1 | 17 | 3 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l250_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 97.7778 | 1 | 1 | 1 | 0 | 0 | ||
| jlack-gatk | INDEL | D6_15 | map_l250_m2_e0 | * | 91.3043 | 95.4545 | 87.5000 | 97.1188 | 21 | 1 | 21 | 3 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l250_m2_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 98.1818 | 1 | 1 | 1 | 0 | 0 | ||
| jlack-gatk | INDEL | D6_15 | map_l250_m2_e1 | * | 91.3043 | 95.4545 | 87.5000 | 97.2125 | 21 | 1 | 21 | 3 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l250_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 98.2456 | 1 | 1 | 1 | 0 | 0 | ||
| jlack-gatk | INDEL | I16_PLUS | func_cds | * | 95.6522 | 91.6667 | 100.0000 | 78.8462 | 11 | 1 | 11 | 0 | 0 | ||
| jlack-gatk | INDEL | I16_PLUS | func_cds | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| jlack-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 93.0769 | 99.1803 | 87.6812 | 86.5889 | 121 | 1 | 121 | 17 | 15 | 88.2353 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 97.1429 | 94.4444 | 100.0000 | 84.6774 | 17 | 1 | 19 | 0 | 0 | ||
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 98.5507 | 97.1429 | 100.0000 | 75.5102 | 34 | 1 | 36 | 0 | 0 | ||
| hfeng-pmm3 | SNP | tv | map_l250_m0_e0 | homalt | 98.2005 | 98.9637 | 97.4490 | 93.5569 | 191 | 2 | 191 | 5 | 3 | 60.0000 | |