PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
42351-42400 / 86044 show all | |||||||||||||||
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.4393 | 99.6255 | 99.2537 | 64.1232 | 266 | 1 | 266 | 2 | 2 | 100.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 96.0000 | 96.0000 | 96.0000 | 53.7037 | 24 | 1 | 24 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 97.7778 | 95.6522 | 100.0000 | 12.0000 | 22 | 1 | 22 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | func_cds | * | 98.8235 | 97.6744 | 100.0000 | 38.2353 | 42 | 1 | 42 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | func_cds | hetalt | 85.7143 | 75.0000 | 100.0000 | 25.0000 | 3 | 1 | 3 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.5885 | 99.1803 | 100.0000 | 70.1235 | 121 | 1 | 121 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 99.0291 | 98.0769 | 100.0000 | 59.6899 | 51 | 1 | 52 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.1870 | 98.3871 | 100.0000 | 85.2381 | 61 | 1 | 62 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 98.8506 | 97.7273 | 100.0000 | 75.1445 | 43 | 1 | 43 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.7886 | 99.5781 | 100.0000 | 25.0000 | 236 | 1 | 237 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | map_l100_m0_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 92.1053 | 3 | 1 | 3 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | map_l100_m0_e0 | homalt | 95.6522 | 91.6667 | 100.0000 | 87.9121 | 11 | 1 | 11 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | map_l100_m1_e0 | homalt | 98.4615 | 96.9697 | 100.0000 | 85.9649 | 32 | 1 | 32 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | map_l100_m2_e0 | homalt | 98.4615 | 96.9697 | 100.0000 | 87.5486 | 32 | 1 | 32 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | map_l100_m2_e1 | homalt | 98.4615 | 96.9697 | 100.0000 | 87.8788 | 32 | 1 | 32 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | map_l125_m0_e0 | homalt | 90.9091 | 83.3333 | 100.0000 | 92.3077 | 5 | 1 | 5 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | map_l125_m1_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 88.5246 | 7 | 1 | 7 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | map_l125_m1_e0 | homalt | 96.5517 | 93.3333 | 100.0000 | 90.4110 | 14 | 1 | 14 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | map_l125_m2_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 90.4110 | 7 | 1 | 7 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | map_l125_m2_e0 | homalt | 96.5517 | 93.3333 | 100.0000 | 91.8129 | 14 | 1 | 14 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | map_l125_m2_e1 | hetalt | 93.3333 | 87.5000 | 100.0000 | 90.6667 | 7 | 1 | 7 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | map_l125_m2_e1 | homalt | 96.5517 | 93.3333 | 100.0000 | 92.1348 | 14 | 1 | 14 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | map_l150_m0_e0 | homalt | 85.7143 | 75.0000 | 100.0000 | 94.4444 | 3 | 1 | 3 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | map_l150_m1_e0 | homalt | 92.3077 | 85.7143 | 100.0000 | 94.5455 | 6 | 1 | 6 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | map_l150_m2_e0 | homalt | 92.3077 | 85.7143 | 100.0000 | 95.3846 | 6 | 1 | 6 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | map_l150_m2_e1 | homalt | 93.3333 | 87.5000 | 100.0000 | 94.8905 | 7 | 1 | 7 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | map_l250_m0_e0 | * | 0.0000 | 0.0000 | 98.9362 | 0 | 1 | 0 | 1 | 1 | 100.0000 | ||
| hfeng-pmm1 | INDEL | I6_15 | map_l250_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| hfeng-pmm1 | INDEL | I6_15 | map_l250_m1_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 97.0588 | 2 | 1 | 2 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | map_l250_m2_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 97.2603 | 2 | 1 | 2 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | map_l250_m2_e1 | homalt | 80.0000 | 66.6667 | 100.0000 | 97.4026 | 2 | 1 | 2 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | map_siren | homalt | 98.3425 | 98.8889 | 97.8022 | 83.6331 | 89 | 1 | 89 | 2 | 2 | 100.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | segdup | het | 98.7952 | 98.7952 | 98.7952 | 92.9780 | 82 | 1 | 82 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | segdup | hetalt | 98.8764 | 97.7778 | 100.0000 | 89.8148 | 44 | 1 | 44 | 0 | 0 | ||
| hfeng-pmm1 | SNP | * | func_cds | homalt | 99.9928 | 99.9857 | 100.0000 | 22.0596 | 6978 | 1 | 6978 | 0 | 0 | ||
| hfeng-pmm1 | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 92.3077 | 92.3077 | 92.3077 | 83.7500 | 12 | 1 | 12 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.9778 | 99.9556 | 100.0000 | 53.1919 | 2251 | 1 | 2251 | 0 | 0 | ||
| hfeng-pmm1 | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| hfeng-pmm1 | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 94.1176 | 88.8889 | 100.0000 | 95.8333 | 8 | 1 | 8 | 0 | 0 | ||
| hfeng-pmm1 | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 92.3077 | 85.7143 | 100.0000 | 95.2381 | 6 | 1 | 6 | 0 | 0 | ||
| hfeng-pmm1 | SNP | * | map_siren | hetalt | 99.3789 | 98.7654 | 100.0000 | 75.3846 | 80 | 1 | 80 | 0 | 0 | ||
| hfeng-pmm1 | SNP | ti | func_cds | homalt | 99.9905 | 99.9810 | 100.0000 | 20.7037 | 5274 | 1 | 5274 | 0 | 0 | ||
| hfeng-pmm1 | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 83.3333 | 83.3333 | 83.3333 | 87.7551 | 5 | 1 | 5 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.9659 | 99.9318 | 100.0000 | 45.7608 | 1465 | 1 | 1465 | 0 | 0 | ||
| hfeng-pmm1 | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| hfeng-pmm1 | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 93.3333 | 87.5000 | 100.0000 | 94.7368 | 7 | 1 | 7 | 0 | 0 | ||
| hfeng-pmm1 | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 90.9091 | 83.3333 | 100.0000 | 93.6709 | 5 | 1 | 5 | 0 | 0 | ||
| hfeng-pmm1 | SNP | ti | map_siren | hetalt | 99.1150 | 98.2456 | 100.0000 | 73.3333 | 56 | 1 | 56 | 0 | 0 | ||
| hfeng-pmm1 | SNP | ti | tech_badpromoters | * | 99.4083 | 98.8235 | 100.0000 | 43.2432 | 84 | 1 | 84 | 0 | 0 | ||
| hfeng-pmm1 | SNP | ti | tech_badpromoters | het | 98.8506 | 97.7273 | 100.0000 | 44.1558 | 43 | 1 | 43 | 0 | 0 | ||