PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
41151-41200 / 86044 show all | |||||||||||||||
| cchapple-custom | SNP | * | map_siren | hetalt | 0.0000 | 98.7654 | 0.0000 | 0.0000 | 80 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | * | tech_badpromoters | het | 97.4359 | 98.7013 | 96.2025 | 56.1111 | 76 | 1 | 76 | 3 | 0 | 0.0000 | |
| cchapple-custom | SNP | * | tech_badpromoters | homalt | 98.7421 | 98.7500 | 98.7342 | 44.3662 | 79 | 1 | 78 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 83.3333 | 0.0000 | 0.0000 | 5 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.8863 | 99.9546 | 99.8181 | 38.5067 | 2200 | 1 | 2195 | 4 | 2 | 50.0000 | |
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 66.6667 | 50.0000 | 100.0000 | 94.7368 | 1 | 1 | 1 | 0 | 0 | ||
| cchapple-custom | SNP | ti | map_siren | hetalt | 0.0000 | 98.2456 | 0.0000 | 0.0000 | 56 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 92.3077 | 0.0000 | 0.0000 | 12 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 98.7654 | 97.5610 | 100.0000 | 86.3469 | 40 | 1 | 37 | 0 | 0 | ||
| cchapple-custom | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 94.1176 | 88.8889 | 100.0000 | 91.2281 | 8 | 1 | 5 | 0 | 0 | ||
| cchapple-custom | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 81.6327 | 83.3333 | 80.0000 | 90.0000 | 5 | 1 | 4 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| cchapple-custom | SNP | tv | map_siren | hetalt | 0.0000 | 98.7654 | 0.0000 | 0.0000 | 80 | 1 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | tv | tech_badpromoters | het | 95.5224 | 96.9697 | 94.1176 | 64.2105 | 32 | 1 | 32 | 2 | 0 | 0.0000 | |
| cchapple-custom | SNP | tv | tech_badpromoters | homalt | 97.4021 | 97.4359 | 97.3684 | 49.3333 | 38 | 1 | 37 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | * | decoy | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 97.1014 | 0 | 1 | 0 | 2 | 1 | 50.0000 | ||
| ciseli-custom | INDEL | C1_5 | * | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | C1_5 | HG002compoundhet | * | 0.0000 | 0.0000 | 10.8949 | 86.7866 | 0 | 1 | 28 | 229 | 83 | 36.2445 | |
| ciseli-custom | INDEL | C1_5 | HG002compoundhet | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 23.8482 | 94.6807 | 0 | 1 | 88 | 281 | 73 | 25.9786 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 39.7059 | 96.7006 | 0 | 1 | 27 | 41 | 5 | 12.1951 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 0.0000 | 0.0000 | 23.8482 | 94.6807 | 0 | 1 | 88 | 281 | 73 | 25.9786 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 0.0000 | 0.0000 | 39.7059 | 96.7006 | 0 | 1 | 27 | 41 | 5 | 12.1951 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 0.0000 | 0.0000 | 27.3810 | 96.7391 | 0 | 1 | 23 | 61 | 7 | 11.4754 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 0.0000 | 0.0000 | 44.4444 | 99.1597 | 0 | 1 | 4 | 5 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 0.0000 | 0.0000 | 21.6981 | 90.8066 | 0 | 1 | 23 | 83 | 19 | 22.8916 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 0.0000 | 0.0000 | 22.2222 | 96.8085 | 0 | 1 | 2 | 7 | 1 | 14.2857 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 68.5714 | 92.3077 | 54.5455 | 45.0000 | 12 | 1 | 12 | 10 | 9 | 90.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 66.6667 | 80.0000 | 57.1429 | 94.5312 | 4 | 1 | 4 | 3 | 1 | 33.3333 | |
| ciseli-custom | INDEL | D16_PLUS | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | D16_PLUS | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | D16_PLUS | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | D16_PLUS | map_l250_m0_e0 | * | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | D16_PLUS | map_l250_m0_e0 | het | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | D16_PLUS | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | D16_PLUS | map_l250_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | D16_PLUS | map_l250_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | D16_PLUS | segdup | homalt | 69.1824 | 91.6667 | 55.5556 | 94.1935 | 11 | 1 | 10 | 8 | 7 | 87.5000 | |
| ciseli-custom | INDEL | D1_5 | decoy | * | 85.7143 | 75.0000 | 100.0000 | 99.9584 | 3 | 1 | 3 | 0 | 0 | ||
| ciseli-custom | INDEL | D1_5 | decoy | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 99.1525 | 0 | 1 | 0 | 1 | 0 | 0.0000 | ||
| ciseli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||