PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
39851-39900 / 86044 show all | |||||||||||||||
| mlin-fermikit | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | D16_PLUS | HG002compoundhet | homalt | 7.6994 | 87.5000 | 4.0268 | 56.6860 | 7 | 1 | 6 | 143 | 142 | 99.3007 | |
| mlin-fermikit | INDEL | D16_PLUS | func_cds | * | 95.6522 | 91.6667 | 100.0000 | 75.5556 | 11 | 1 | 11 | 0 | 0 | ||
| mlin-fermikit | INDEL | D16_PLUS | func_cds | het | 93.3333 | 87.5000 | 100.0000 | 75.8621 | 7 | 1 | 7 | 0 | 0 | ||
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 60.0000 | 75.0000 | 50.0000 | 98.9286 | 3 | 1 | 3 | 3 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 60.0000 | 75.0000 | 50.0000 | 98.8909 | 3 | 1 | 3 | 3 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 51.8519 | 93.3333 | 35.8974 | 93.7898 | 14 | 1 | 14 | 25 | 7 | 28.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 52.6316 | 93.7500 | 36.5854 | 94.4142 | 15 | 1 | 15 | 26 | 7 | 26.9231 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 51.7241 | 93.7500 | 35.7143 | 94.3396 | 15 | 1 | 15 | 27 | 8 | 29.6296 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l125_m2_e1 | hetalt | 75.0000 | 75.0000 | 75.0000 | 80.9524 | 3 | 1 | 3 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l150_m2_e1 | hetalt | 50.0000 | 50.0000 | 50.0000 | 75.0000 | 1 | 1 | 1 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l250_m0_e0 | * | 0.0000 | 0.0000 | 98.0000 | 0 | 1 | 0 | 1 | 0 | 0.0000 | ||
| mlin-fermikit | INDEL | D16_PLUS | map_l250_m0_e0 | het | 0.0000 | 0.0000 | 96.4286 | 0 | 1 | 0 | 1 | 0 | 0.0000 | ||
| mlin-fermikit | INDEL | D16_PLUS | segdup | het | 85.3948 | 97.2973 | 76.0870 | 93.4566 | 36 | 1 | 35 | 11 | 5 | 45.4545 | |
| mlin-fermikit | INDEL | D16_PLUS | segdup | homalt | 84.6154 | 91.6667 | 78.5714 | 97.0276 | 11 | 1 | 11 | 3 | 2 | 66.6667 | |
| mlin-fermikit | INDEL | D1_5 | func_cds | * | 99.0596 | 99.3711 | 98.7500 | 26.2673 | 158 | 1 | 158 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | D1_5 | func_cds | het | 98.8235 | 98.8235 | 98.8235 | 29.7521 | 84 | 1 | 84 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 97.1544 | 99.6124 | 94.8148 | 60.2941 | 257 | 1 | 256 | 14 | 13 | 92.8571 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 90.0000 | 90.0000 | 90.0000 | 99.1349 | 9 | 1 | 9 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 92.3077 | 85.7143 | 100.0000 | 99.0964 | 6 | 1 | 6 | 0 | 0 | ||
| mlin-fermikit | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 98.0769 | 0 | 1 | 0 | 1 | 1 | 100.0000 | ||
| mlin-fermikit | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | D1_5 | map_l150_m0_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 95.6522 | 1 | 1 | 1 | 0 | 0 | ||
| mlin-fermikit | INDEL | D1_5 | map_l250_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 92.8571 | 2 | 1 | 2 | 0 | 0 | ||
| mlin-fermikit | INDEL | D1_5 | map_l250_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 95.0000 | 2 | 1 | 2 | 0 | 0 | ||
| mlin-fermikit | INDEL | D1_5 | map_l250_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 95.3488 | 2 | 1 | 2 | 0 | 0 | ||
| mlin-fermikit | INDEL | D1_5 | tech_badpromoters | het | 87.5000 | 87.5000 | 87.5000 | 33.3333 | 7 | 1 | 7 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | tech_badpromoters | hetalt | 66.6667 | 50.0000 | 100.0000 | 0.0000 | 1 | 1 | 1 | 0 | 0 | ||
| mlin-fermikit | INDEL | D6_15 | func_cds | het | 98.2456 | 96.5517 | 100.0000 | 36.3636 | 28 | 1 | 28 | 0 | 0 | ||
| mlin-fermikit | INDEL | D6_15 | func_cds | hetalt | 66.6667 | 50.0000 | 100.0000 | 80.0000 | 1 | 1 | 1 | 0 | 0 | ||
| mlin-fermikit | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 83.1683 | 97.6744 | 72.4138 | 74.4493 | 42 | 1 | 42 | 16 | 14 | 87.5000 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 90.9091 | 95.2381 | 86.9565 | 50.0000 | 20 | 1 | 20 | 3 | 2 | 66.6667 | |
| mlin-fermikit | INDEL | D6_15 | map_l250_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 87.5000 | 1 | 1 | 1 | 0 | 0 | ||
| mlin-fermikit | INDEL | D6_15 | map_l250_m2_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 93.3333 | 1 | 1 | 1 | 0 | 0 | ||
| mlin-fermikit | INDEL | D6_15 | map_l250_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 93.3333 | 1 | 1 | 1 | 0 | 0 | ||
| mlin-fermikit | INDEL | I16_PLUS | func_cds | het | 94.1176 | 88.8889 | 100.0000 | 66.6667 | 8 | 1 | 8 | 0 | 0 | ||
| mlin-fermikit | INDEL | I16_PLUS | func_cds | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 50.0000 | 100.0000 | 1 | 1 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 83.1683 | 93.3333 | 75.0000 | 80.5825 | 14 | 1 | 15 | 5 | 5 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 93.6170 | 97.7778 | 89.7959 | 82.5000 | 44 | 1 | 44 | 5 | 5 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 90.9091 | 93.7500 | 88.2353 | 76.0563 | 15 | 1 | 15 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 66.6667 | 50.0000 | 100.0000 | 50.0000 | 1 | 1 | 1 | 0 | 0 | ||
| mlin-fermikit | INDEL | I16_PLUS | map_l100_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | I16_PLUS | map_l100_m0_e0 | homalt | 40.0000 | 50.0000 | 33.3333 | 89.6552 | 1 | 1 | 1 | 2 | 1 | 50.0000 | |