PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
39201-39250 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | SNP | tv | func_cds | * | 99.8743 | 99.9771 | 99.7716 | 27.8940 | 4370 | 1 | 4369 | 10 | 0 | 0.0000 | |
| raldana-dualsentieon | SNP | tv | func_cds | het | 99.7933 | 99.9624 | 99.6248 | 29.8500 | 2656 | 1 | 2655 | 10 | 0 | 0.0000 | |
| raldana-dualsentieon | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.0000 | 92.3077 | 100.0000 | 81.5385 | 12 | 1 | 12 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 94.1176 | 88.8889 | 100.0000 | 95.3216 | 8 | 1 | 8 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9614 | 99.9743 | 99.9486 | 59.3220 | 3886 | 1 | 3886 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.9819 | 99.9637 | 100.0000 | 35.9582 | 2757 | 1 | 2757 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| raldana-dualsentieon | SNP | tv | tech_badpromoters | het | 98.4615 | 96.9697 | 100.0000 | 48.3871 | 32 | 1 | 32 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | tech_badpromoters | homalt | 97.4359 | 97.4359 | 97.4359 | 50.6329 | 38 | 1 | 38 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | decoy | * | 94.7368 | 90.0000 | 100.0000 | 99.9971 | 9 | 1 | 9 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | * | decoy | het | 90.9091 | 83.3333 | 100.0000 | 99.9534 | 5 | 1 | 5 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | * | func_cds | hetalt | 88.8889 | 80.0000 | 100.0000 | 66.6667 | 4 | 1 | 4 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 84.6154 | 91.6667 | 78.5714 | 99.2269 | 11 | 1 | 11 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.4848 | 2 | 1 | 2 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 85.7143 | 90.0000 | 81.8182 | 99.3612 | 9 | 1 | 9 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.3051 | 2 | 1 | 2 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 85.7143 | 75.0000 | 100.0000 | 99.7273 | 3 | 1 | 3 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 66.6667 | 66.6667 | 66.6667 | 99.5208 | 2 | 1 | 2 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 97.8723 | 97.8723 | 97.8723 | 51.5464 | 46 | 1 | 46 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | map_l125_m1_e0 | hetalt | 95.1220 | 97.5000 | 92.8571 | 93.4783 | 39 | 1 | 39 | 3 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | * | map_l125_m2_e0 | hetalt | 95.3488 | 97.6190 | 93.1818 | 93.9643 | 41 | 1 | 41 | 3 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | * | map_l150_m1_e0 | hetalt | 93.0233 | 95.2381 | 90.9091 | 95.7447 | 20 | 1 | 20 | 2 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | * | map_l150_m2_e0 | hetalt | 93.0233 | 95.2381 | 90.9091 | 96.2901 | 20 | 1 | 20 | 2 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | * | map_l250_m0_e0 | homalt | 96.0000 | 96.0000 | 96.0000 | 97.4093 | 24 | 1 | 24 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | tech_badpromoters | * | 98.6842 | 98.6842 | 98.6842 | 90.5824 | 75 | 1 | 75 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | tech_badpromoters | homalt | 98.4615 | 96.9697 | 100.0000 | 60.9756 | 32 | 1 | 32 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 66.6667 | 100.0000 | 2 | 1 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 66.6667 | 100.0000 | 2 | 1 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | D16_PLUS | decoy | * | 90.9091 | 83.3333 | 100.0000 | 98.7715 | 5 | 1 | 5 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | decoy | het | 85.7143 | 75.0000 | 100.0000 | 98.9362 | 3 | 1 | 3 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | func_cds | * | 95.6522 | 91.6667 | 100.0000 | 71.0526 | 11 | 1 | 11 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | func_cds | het | 93.3333 | 87.5000 | 100.0000 | 76.6667 | 7 | 1 | 7 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 66.6667 | 50.0000 | 100.0000 | 97.5610 | 1 | 1 | 1 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 66.6667 | 50.0000 | 100.0000 | 97.5610 | 1 | 1 | 1 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7230 | 99.7230 | 99.7230 | 60.8884 | 360 | 1 | 360 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.4427 | 99.6296 | 99.2565 | 60.1481 | 269 | 1 | 267 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 98.8764 | 97.7778 | 100.0000 | 60.3604 | 44 | 1 | 44 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l100_m0_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 82.3529 | 3 | 1 | 3 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 80.0000 | 80.0000 | 80.0000 | 94.6237 | 4 | 1 | 4 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | map_l125_m2_e1 | hetalt | 85.7143 | 75.0000 | 100.0000 | 85.7143 | 3 | 1 | 3 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D16_PLUS | map_l150_m1_e0 | * | 96.5517 | 93.3333 | 100.0000 | 94.2623 | 14 | 1 | 14 | 0 | 0 | ||