PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
38651-38700 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | INDEL | * | decoy | het | 90.9091 | 83.3333 | 100.0000 | 99.8908 | 5 | 1 | 7 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | func_cds | hetalt | 88.8889 | 80.0000 | 100.0000 | 75.0000 | 4 | 1 | 5 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | func_cds | homalt | 99.7783 | 99.5575 | 100.0000 | 30.7692 | 225 | 1 | 225 | 0 | 0 | ||
| jli-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| jli-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| jli-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| jli-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| jli-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| jli-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| jli-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| jli-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| jli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.5851 | 99.7230 | 99.4475 | 61.2420 | 360 | 1 | 360 | 2 | 1 | 50.0000 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 95.6522 | 91.6667 | 100.0000 | 43.4783 | 11 | 1 | 13 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.7835 | 99.7835 | 99.7835 | 58.0762 | 461 | 1 | 461 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.4220 | 98.8506 | 100.0000 | 80.7606 | 86 | 1 | 86 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.0291 | 98.0769 | 100.0000 | 83.2143 | 51 | 1 | 47 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 94.1176 | 88.8889 | 100.0000 | 92.6606 | 8 | 1 | 8 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 96.5517 | 93.3333 | 100.0000 | 97.0464 | 14 | 1 | 14 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.3492 | 99.5652 | 99.1342 | 68.6141 | 229 | 1 | 229 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.5366 | 99.0196 | 98.0583 | 62.1324 | 101 | 1 | 101 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 92.3077 | 92.3077 | 92.3077 | 48.0000 | 12 | 1 | 12 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 72.7273 | 80.0000 | 66.6667 | 95.6204 | 4 | 1 | 4 | 2 | 0 | 0.0000 | |
| jli-custom | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 87.5000 | 93.3333 | 82.3529 | 94.2568 | 14 | 1 | 14 | 3 | 0 | 0.0000 | |
| jli-custom | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 88.2353 | 93.7500 | 83.3333 | 95.0000 | 15 | 1 | 15 | 3 | 0 | 0.0000 | |
| jli-custom | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 88.2353 | 93.7500 | 83.3333 | 95.0276 | 15 | 1 | 15 | 3 | 0 | 0.0000 | |
| jli-custom | INDEL | D16_PLUS | map_l125_m2_e1 | * | 96.4286 | 96.4286 | 96.4286 | 95.7382 | 27 | 1 | 27 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D16_PLUS | map_l125_m2_e1 | hetalt | 85.7143 | 75.0000 | 100.0000 | 92.1053 | 3 | 1 | 3 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_l150_m2_e1 | * | 94.4444 | 94.4444 | 94.4444 | 96.0177 | 17 | 1 | 17 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D16_PLUS | map_l150_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 96.4286 | 1 | 1 | 1 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | map_siren | homalt | 94.2857 | 97.0588 | 91.6667 | 92.7419 | 33 | 1 | 33 | 3 | 0 | 0.0000 | |
| jli-custom | INDEL | D16_PLUS | segdup | * | 97.4359 | 98.2759 | 96.6102 | 95.0956 | 57 | 1 | 57 | 2 | 1 | 50.0000 | |
| jli-custom | INDEL | D16_PLUS | segdup | hetalt | 94.1176 | 88.8889 | 100.0000 | 91.8033 | 8 | 1 | 10 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | tech_badpromoters | * | 85.7143 | 75.0000 | 100.0000 | 50.0000 | 3 | 1 | 3 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | tech_badpromoters | het | 85.7143 | 75.0000 | 100.0000 | 0.0000 | 3 | 1 | 3 | 0 | 0 | ||
| jli-custom | INDEL | D1_5 | HG002compoundhet | homalt | 86.9565 | 99.6564 | 77.1277 | 84.9600 | 290 | 1 | 290 | 86 | 84 | 97.6744 | |
| jli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.7293 | 99.8915 | 99.5676 | 76.0425 | 921 | 1 | 921 | 4 | 2 | 50.0000 | |
| jli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.9319 | 99.9727 | 99.8911 | 50.1493 | 3665 | 1 | 3668 | 4 | 4 | 100.0000 | |
| jli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 99.2405 | 99.4924 | 98.9899 | 56.9565 | 196 | 1 | 196 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | D1_5 | map_l125_m0_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.5612 | 2 | 1 | 2 | 0 | 0 | ||
| jli-custom | INDEL | D1_5 | map_l150_m0_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 99.0826 | 1 | 1 | 1 | 0 | 0 | ||
| jli-custom | INDEL | D1_5 | map_l150_m0_e0 | homalt | 98.8235 | 98.8235 | 98.8235 | 89.2812 | 84 | 1 | 84 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | D1_5 | map_l250_m0_e0 | het | 92.7536 | 96.9697 | 88.8889 | 96.9543 | 32 | 1 | 32 | 4 | 0 | 0.0000 | |
| jli-custom | INDEL | D1_5 | map_l250_m0_e0 | homalt | 96.0000 | 92.3077 | 100.0000 | 97.1292 | 12 | 1 | 12 | 0 | 0 | ||
| jli-custom | INDEL | D1_5 | map_l250_m1_e0 | het | 96.9163 | 99.0991 | 94.8276 | 94.9301 | 110 | 1 | 110 | 6 | 1 | 16.6667 | |
| jli-custom | INDEL | D1_5 | map_l250_m2_e0 | het | 97.1660 | 99.1736 | 95.2381 | 95.1087 | 120 | 1 | 120 | 6 | 1 | 16.6667 | |
| jli-custom | INDEL | D1_5 | map_l250_m2_e1 | het | 97.1888 | 99.1803 | 95.2756 | 95.1729 | 121 | 1 | 121 | 6 | 1 | 16.6667 | |
| jli-custom | INDEL | D1_5 | segdup | hetalt | 99.0291 | 98.0769 | 100.0000 | 95.5932 | 51 | 1 | 52 | 0 | 0 | ||
| jli-custom | INDEL | D1_5 | tech_badpromoters | * | 97.2973 | 94.7368 | 100.0000 | 48.5714 | 18 | 1 | 18 | 0 | 0 | ||
| jli-custom | INDEL | D1_5 | tech_badpromoters | het | 93.3333 | 87.5000 | 100.0000 | 58.8235 | 7 | 1 | 7 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | func_cds | * | 98.8235 | 97.6744 | 100.0000 | 52.8090 | 42 | 1 | 42 | 0 | 0 | ||