PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
38201-38250 / 86044 show all | |||||||||||||||
| eyeh-varpipe | INDEL | D16_PLUS | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 90.2778 | 90.9091 | 89.6552 | 98.2769 | 10 | 1 | 26 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 93.3333 | 87.5000 | 100.0000 | 98.5889 | 7 | 1 | 15 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 0.0000 | 94.5833 | 99.7919 | 0 | 1 | 227 | 13 | 12 | 92.3077 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 0.0000 | 88.8889 | 99.7402 | 0 | 1 | 24 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 50.1159 | 99.4924 | 33.4936 | 34.9322 | 196 | 1 | 209 | 415 | 385 | 92.7711 | |
| eyeh-varpipe | INDEL | D1_5 | map_l250_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.7179 | 2 | 1 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D1_5 | map_l250_m1_e0 | homalt | 97.3286 | 98.2456 | 96.4286 | 95.0059 | 56 | 1 | 81 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l250_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.9071 | 2 | 1 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D1_5 | map_l250_m2_e0 | homalt | 97.4929 | 98.3333 | 96.6667 | 95.1561 | 59 | 1 | 87 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l250_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.9362 | 2 | 1 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D1_5 | map_l250_m2_e1 | homalt | 97.5297 | 98.3333 | 96.7391 | 95.1933 | 59 | 1 | 89 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | func_cds | hetalt | 66.6667 | 50.0000 | 100.0000 | 66.6667 | 1 | 1 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D6_15 | map_l125_m0_e0 | het | 95.2276 | 96.5517 | 93.9394 | 90.5714 | 28 | 1 | 31 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l150_m2_e0 | het | 95.1374 | 97.8261 | 92.5926 | 88.8430 | 45 | 1 | 50 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l150_m2_e1 | het | 95.1593 | 97.8723 | 92.5926 | 89.1129 | 46 | 1 | 50 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l250_m2_e0 | homalt | 86.0215 | 83.3333 | 88.8889 | 96.3563 | 5 | 1 | 8 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l250_m2_e1 | homalt | 86.0215 | 83.3333 | 88.8889 | 96.4000 | 5 | 1 | 8 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | tech_badpromoters | het | 94.7368 | 90.0000 | 100.0000 | 50.0000 | 9 | 1 | 9 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D6_15 | tech_badpromoters | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | I16_PLUS | HG002compoundhet | homalt | 2.4742 | 66.6667 | 1.2605 | 25.1572 | 2 | 1 | 3 | 235 | 234 | 99.5745 | |
| eyeh-varpipe | INDEL | I16_PLUS | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 43.7500 | 0 | 1 | 0 | 9 | 7 | 77.7778 | ||
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 63.6364 | 87.5000 | 50.0000 | 29.4118 | 7 | 1 | 18 | 18 | 18 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| eyeh-varpipe | INDEL | I16_PLUS | map_l100_m0_e0 | homalt | 57.1429 | 50.0000 | 66.6667 | 76.9231 | 1 | 1 | 2 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| eyeh-varpipe | INDEL | I16_PLUS | map_l125_m0_e0 | homalt | 50.0000 | 50.0000 | 50.0000 | 81.8182 | 1 | 1 | 1 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| eyeh-varpipe | INDEL | I16_PLUS | map_l250_m1_e0 | * | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | I16_PLUS | map_l250_m1_e0 | het | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | I16_PLUS | map_l250_m2_e0 | * | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | I16_PLUS | map_l250_m2_e0 | het | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | I16_PLUS | map_l250_m2_e1 | * | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | I16_PLUS | map_l250_m2_e1 | het | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| eyeh-varpipe | INDEL | I16_PLUS | tech_badpromoters | het | 50.0000 | 50.0000 | 50.0000 | 33.3333 | 1 | 1 | 1 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | tech_badpromoters | homalt | 66.6667 | 50.0000 | 100.0000 | 0.0000 | 1 | 1 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I1_5 | func_cds | het | 97.4503 | 98.3051 | 96.6102 | 34.4444 | 58 | 1 | 57 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | INDEL | I1_5 | func_cds | homalt | 99.1798 | 99.1597 | 99.2000 | 23.7805 | 118 | 1 | 124 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 21.0909 | 34.8341 | 0 | 1 | 58 | 217 | 181 | 83.4101 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 58.8235 | 50.0000 | 71.4286 | 69.5652 | 1 | 1 | 5 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l125_m0_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 93.4132 | 3 | 1 | 11 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I1_5 | map_l125_m0_e0 | homalt | 98.7334 | 99.1228 | 98.3471 | 87.3629 | 113 | 1 | 238 | 4 | 3 | 75.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l150_m0_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 95.4545 | 2 | 1 | 5 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I1_5 | map_l150_m0_e0 | homalt | 98.5394 | 98.5075 | 98.5714 | 90.5914 | 66 | 1 | 138 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l150_m1_e0 | homalt | 99.2826 | 99.4949 | 99.0712 | 87.5674 | 197 | 1 | 320 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l150_m2_e0 | homalt | 99.0179 | 99.5025 | 98.5380 | 88.0795 | 200 | 1 | 337 | 5 | 5 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l150_m2_e1 | homalt | 99.0279 | 99.5098 | 98.5507 | 88.2373 | 203 | 1 | 340 | 5 | 5 | 100.0000 | |