PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
37801-37850 / 86044 show all | |||||||||||||||
| gduggal-snapfb | INDEL | I16_PLUS | map_l150_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | map_l250_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | map_l250_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | map_l250_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | map_l250_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | map_l250_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | map_l250_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 93.4156 | 0 | 1 | 0 | 16 | 5 | 31.2500 | ||
| gduggal-snapfb | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 15.3846 | 50.0000 | 9.0909 | 81.0345 | 1 | 1 | 1 | 10 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 71.6418 | 88.8889 | 60.0000 | 93.5484 | 8 | 1 | 6 | 4 | 1 | 25.0000 | |
| gduggal-snapfb | INDEL | I1_5 | map_l150_m1_e0 | hetalt | 88.1890 | 88.8889 | 87.5000 | 95.9391 | 8 | 1 | 7 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 88.1890 | 88.8889 | 87.5000 | 96.5217 | 8 | 1 | 7 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | I1_5 | map_l150_m2_e1 | hetalt | 89.4410 | 90.0000 | 88.8889 | 96.1373 | 9 | 1 | 8 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | I1_5 | map_l250_m0_e0 | het | 93.3333 | 93.3333 | 93.3333 | 97.4315 | 14 | 1 | 14 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | I1_5 | map_l250_m0_e0 | homalt | 94.1176 | 88.8889 | 100.0000 | 98.8473 | 8 | 1 | 8 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I1_5 | map_l250_m1_e0 | homalt | 95.5556 | 97.7273 | 93.4783 | 96.7742 | 43 | 1 | 43 | 3 | 2 | 66.6667 | |
| gduggal-snapfb | INDEL | I1_5 | map_l250_m2_e0 | homalt | 95.6522 | 97.7778 | 93.6170 | 97.1095 | 44 | 1 | 44 | 3 | 2 | 66.6667 | |
| gduggal-snapfb | INDEL | I1_5 | map_l250_m2_e1 | homalt | 95.7447 | 97.8261 | 93.7500 | 97.1240 | 45 | 1 | 45 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | D6_15 | map_l125_m0_e0 | het | 86.1538 | 96.5517 | 77.7778 | 95.0549 | 28 | 1 | 28 | 8 | 8 | 100.0000 | |
| ghariani-varprowl | INDEL | D6_15 | map_l150_m0_e0 | homalt | 92.3077 | 85.7143 | 100.0000 | 92.2078 | 6 | 1 | 6 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D6_15 | map_l150_m2_e0 | het | 87.3786 | 97.8261 | 78.9474 | 94.7368 | 45 | 1 | 45 | 12 | 11 | 91.6667 | |
| ghariani-varprowl | INDEL | D6_15 | map_l150_m2_e1 | het | 85.9813 | 97.8723 | 76.6667 | 94.5946 | 46 | 1 | 46 | 14 | 13 | 92.8571 | |
| ghariani-varprowl | INDEL | D6_15 | tech_badpromoters | het | 90.0000 | 90.0000 | 90.0000 | 58.3333 | 9 | 1 | 9 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | D6_15 | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | D6_15 | tech_badpromoters | homalt | 90.9091 | 83.3333 | 100.0000 | 50.0000 | 5 | 1 | 5 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I16_PLUS | func_cds | het | 88.8889 | 88.8889 | 88.8889 | 59.0909 | 8 | 1 | 8 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I16_PLUS | func_cds | homalt | 66.6667 | 50.0000 | 100.0000 | 85.7143 | 1 | 1 | 1 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | I16_PLUS | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I16_PLUS | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I16_PLUS | map_l125_m1_e0 | het | 76.1905 | 88.8889 | 66.6667 | 85.8824 | 8 | 1 | 8 | 4 | 3 | 75.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l125_m2_e0 | het | 76.1905 | 88.8889 | 66.6667 | 87.5000 | 8 | 1 | 8 | 4 | 3 | 75.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l125_m2_e1 | het | 76.1905 | 88.8889 | 66.6667 | 87.6289 | 8 | 1 | 8 | 4 | 3 | 75.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I16_PLUS | map_l150_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | I16_PLUS | map_l150_m1_e0 | het | 66.6667 | 83.3333 | 55.5556 | 87.5000 | 5 | 1 | 5 | 4 | 3 | 75.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l150_m2_e0 | het | 66.6667 | 83.3333 | 55.5556 | 88.6076 | 5 | 1 | 5 | 4 | 3 | 75.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l150_m2_e1 | het | 66.6667 | 83.3333 | 55.5556 | 88.6076 | 5 | 1 | 5 | 4 | 3 | 75.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | tech_badpromoters | het | 40.0000 | 50.0000 | 33.3333 | 66.6667 | 1 | 1 | 1 | 2 | 2 | 100.0000 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | I1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 50.0000 | 50.0000 | 50.0000 | 93.7500 | 1 | 1 | 1 | 1 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | I1_5 | map_l250_m0_e0 | * | 90.1961 | 95.8333 | 85.1852 | 98.5842 | 23 | 1 | 23 | 4 | 1 | 25.0000 | |
| ghariani-varprowl | INDEL | I1_5 | map_l250_m0_e0 | homalt | 94.1176 | 88.8889 | 100.0000 | 96.8127 | 8 | 1 | 8 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I1_5 | map_l250_m1_e0 | het | 90.7692 | 98.3333 | 84.2857 | 97.7827 | 59 | 1 | 59 | 11 | 3 | 27.2727 | |