PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
24251-24300 / 86044 show all
jlack-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
98.5507
100.0000
97.1429
69.2982
6806822
100.0000
jlack-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
76.1905
100.0000
61.5385
74.6753
240241515
100.0000
jlack-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
jlack-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
0.0000
0.0000
0.0000
00000
jlack-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
jlack-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
jlack-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
87.7339
100.0000
78.1481
67.6259
21102115958
98.3051
jlack-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
89.3112
100.0000
80.6867
66.4748
18801884544
97.7778
jlack-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
90.6706
100.0000
82.9333
68.7239
31103116463
98.4375
jlack-gatkINDELI6_15lowcmp_SimpleRepeat_diTR_11to50homalt
94.1538
100.0000
88.9535
77.1580
15301531918
94.7368
jlack-gatkINDELI6_15lowcmp_SimpleRepeat_diTR_51to200homalt
0.0000
100.0000
00000
jlack-gatkINDELI6_15lowcmp_SimpleRepeat_diTR_gt200*
0.0000
0.0000
0.0000
00000
jlack-gatkINDELI6_15lowcmp_SimpleRepeat_diTR_gt200het
0.0000
0.0000
0.0000
00000
jlack-gatkINDELI6_15lowcmp_SimpleRepeat_diTR_gt200hetalt
0.0000
0.0000
0.0000
00000
jlack-gatkINDELI6_15lowcmp_SimpleRepeat_diTR_gt200homalt
0.0000
0.0000
0.0000
00000
jlack-gatkINDELI6_15lowcmp_SimpleRepeat_homopolymer_6to10homalt
100.0000
100.0000
100.0000
82.2464
4904900
jlack-gatkINDELI6_15lowcmp_SimpleRepeat_homopolymer_gt10*
100.0000
100.0000
100.0000
99.8657
20200
jlack-gatkINDELI6_15lowcmp_SimpleRepeat_homopolymer_gt10het
0.0000
100.0000
00000
jlack-gatkINDELI6_15lowcmp_SimpleRepeat_homopolymer_gt10hetalt
100.0000
100.0000
100.0000
99.4751
20200
jlack-gatkINDELI6_15lowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
100.0000
00000
jlack-gatkINDELI6_15lowcmp_SimpleRepeat_quadTR_51to200homalt
0.0000
0.0000
96.4286
00011
100.0000
jlack-gatkINDELI6_15lowcmp_SimpleRepeat_quadTR_gt200*
0.0000
0.0000
0.0000
00000
jlack-gatkINDELI6_15lowcmp_SimpleRepeat_quadTR_gt200het
0.0000
0.0000
0.0000
00000
jlack-gatkINDELI6_15lowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
jlack-gatkINDELI6_15lowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
jlack-gatkINDELI6_15lowcmp_SimpleRepeat_triTR_11to50homalt
100.0000
100.0000
100.0000
62.1795
5905900
jlack-gatkINDELI6_15lowcmp_SimpleRepeat_triTR_51to200het
100.0000
100.0000
10000
jlack-gatkINDELI6_15lowcmp_SimpleRepeat_triTR_51to200homalt
0.0000
100.0000
00000
jlack-gatkINDELI6_15map_l100_m0_e0homalt
100.0000
100.0000
100.0000
89.8305
1201200
jlack-gatkINDELI6_15map_l100_m1_e0homalt
97.0588
100.0000
94.2857
87.3646
3303320
0.0000
jlack-gatkINDELI6_15map_l100_m2_e0homalt
97.0588
100.0000
94.2857
88.4868
3303320
0.0000
jlack-gatkINDELI6_15map_l100_m2_e1homalt
97.0588
100.0000
94.2857
88.7097
3303320
0.0000
jlack-gatkINDELI6_15map_l125_m0_e0hetalt
0.0000
100.0000
00000
jlack-gatkINDELI6_15map_l125_m0_e0homalt
100.0000
100.0000
100.0000
93.0233
60600
jlack-gatkINDELI6_15map_l125_m1_e0homalt
93.7500
100.0000
88.2353
91.1458
1501520
0.0000
jlack-gatkINDELI6_15map_l125_m2_e0homalt
93.7500
100.0000
88.2353
92.2374
1501520
0.0000
jlack-gatkINDELI6_15map_l125_m2_e1homalt
93.7500
100.0000
88.2353
92.4444
1501520
0.0000
jlack-gatkINDELI6_15map_l150_m0_e0hetalt
0.0000
100.0000
00000
jlack-gatkINDELI6_15map_l150_m0_e0homalt
100.0000
100.0000
100.0000
94.0299
40400
jlack-gatkINDELI6_15map_l150_m1_e0hetalt
100.0000
100.0000
100.0000
93.3333
30300
jlack-gatkINDELI6_15map_l150_m1_e0homalt
93.3333
100.0000
87.5000
94.6309
70710
0.0000
jlack-gatkINDELI6_15map_l150_m2_e0hetalt
100.0000
100.0000
100.0000
94.2308
30300
jlack-gatkINDELI6_15map_l150_m2_e0homalt
93.3333
100.0000
87.5000
95.3757
70710
0.0000
jlack-gatkINDELI6_15map_l150_m2_e1hetalt
100.0000
100.0000
100.0000
94.4444
30300
jlack-gatkINDELI6_15map_l150_m2_e1homalt
94.1176
100.0000
88.8889
94.9721
80810
0.0000
jlack-gatkINDELI6_15map_l250_m0_e0*
100.0000
100.0000
100.0000
99.4286
10100
jlack-gatkINDELI6_15map_l250_m0_e0het
0.0000
100.0000
00000
jlack-gatkINDELI6_15map_l250_m0_e0hetalt
0.0000
100.0000
00000
jlack-gatkINDELI6_15map_l250_m0_e0homalt
100.0000
100.0000
100.0000
97.6190
10100
jlack-gatkINDELI6_15map_l250_m1_e0hetalt
0.0000
100.0000
00000