PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 451 452 453 454 455 456 457 458 459 ... 1720 1721 » 22701-22750 / 86044 show all
egarrison-hhga	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_gt200	het		0.0000	0.0000	0.0000	0	0	0	0	0
egarrison-hhga	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_gt200	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
egarrison-hhga	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_gt200	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
egarrison-hhga	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_51to200	homalt	100.0000	100.0000	100.0000	32.2581	21	0	21	0	0
egarrison-hhga	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_gt200	*		0.0000	0.0000	0.0000	0	0	0	0	0
egarrison-hhga	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_gt200	het		0.0000	0.0000	0.0000	0	0	0	0	0
egarrison-hhga	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_gt200	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
egarrison-hhga	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_gt200	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
egarrison-hhga	INDEL	D6_15	map_l100_m0_e0	homalt	97.9592	100.0000	96.0000	87.9808	24	0	24	1	1	100.0000
egarrison-hhga	INDEL	D6_15	map_l125_m0_e0	homalt	96.0000	100.0000	92.3077	91.4474	12	0	12	1	1	100.0000
egarrison-hhga	INDEL	D6_15	map_l150_m0_e0	homalt	93.3333	100.0000	87.5000	93.7500	7	0	7	1	1	100.0000
egarrison-hhga	INDEL	D6_15	map_l250_m0_e0	*	100.0000	100.0000	100.0000	97.6378	6	0	6	0	0
egarrison-hhga	INDEL	D6_15	map_l250_m0_e0	het	100.0000	100.0000	100.0000	97.6048	4	0	4	0	0
egarrison-hhga	INDEL	D6_15	map_l250_m0_e0	hetalt		0.0000		100.0000	0	0	0	0	0
egarrison-hhga	INDEL	D6_15	map_l250_m0_e0	homalt	100.0000	100.0000	100.0000	97.3333	2	0	2	0	0
egarrison-hhga	INDEL	D6_15	map_l250_m1_e0	het	100.0000	100.0000	100.0000	96.3455	11	0	11	0	0
egarrison-hhga	INDEL	D6_15	map_l250_m1_e0	homalt	100.0000	100.0000	100.0000	95.8333	5	0	5	0	0
egarrison-hhga	INDEL	D6_15	map_l250_m2_e0	het	100.0000	100.0000	100.0000	95.9420	14	0	14	0	0
egarrison-hhga	INDEL	D6_15	map_l250_m2_e0	homalt	100.0000	100.0000	100.0000	95.6835	6	0	6	0	0
egarrison-hhga	INDEL	D6_15	map_l250_m2_e1	het	100.0000	100.0000	100.0000	96.0452	14	0	14	0	0
egarrison-hhga	INDEL	D6_15	map_l250_m2_e1	homalt	100.0000	100.0000	100.0000	95.7447	6	0	6	0	0
egarrison-hhga	INDEL	D6_15	segdup	homalt	100.0000	100.0000	100.0000	92.5150	50	0	50	0	0
egarrison-hhga	INDEL	D6_15	segdupwithalt	*		0.0000		100.0000	0	0	0	0	0
egarrison-hhga	INDEL	D6_15	segdupwithalt	het		0.0000		100.0000	0	0	0	0	0
egarrison-hhga	INDEL	D6_15	segdupwithalt	hetalt		0.0000		100.0000	0	0	0	0	0
egarrison-hhga	INDEL	D6_15	segdupwithalt	homalt		0.0000		100.0000	0	0	0	0	0
egarrison-hhga	INDEL	D6_15	tech_badpromoters	het	100.0000	100.0000	100.0000	50.0000	10	0	10	0	0
egarrison-hhga	INDEL	D6_15	tech_badpromoters	homalt	100.0000	100.0000	100.0000	60.0000	6	0	6	0	0
egarrison-hhga	INDEL	I16_PLUS	HG002compoundhet	homalt	5.9406	100.0000	3.0612	65.7343	3	0	3	95	69	72.6316
egarrison-hhga	INDEL	I16_PLUS	decoy	*		0.0000		100.0000	0	0	0	0	0
egarrison-hhga	INDEL	I16_PLUS	decoy	het		0.0000		100.0000	0	0	0	0	0
egarrison-hhga	INDEL	I16_PLUS	decoy	hetalt		0.0000		100.0000	0	0	0	0	0
egarrison-hhga	INDEL	I16_PLUS	decoy	homalt		0.0000		100.0000	0	0	0	0	0
egarrison-hhga	INDEL	I16_PLUS	func_cds	het	100.0000	100.0000	100.0000	60.8696	9	0	9	0	0
egarrison-hhga	INDEL	I16_PLUS	func_cds	homalt	100.0000	100.0000	100.0000	86.6667	2	0	2	0	0
egarrison-hhga	INDEL	I16_PLUS	lowcmp_AllRepeats_gt200bp_gt95identity_merged	*		0.0000		100.0000	0	0	0	0	0
egarrison-hhga	INDEL	I16_PLUS	lowcmp_AllRepeats_gt200bp_gt95identity_merged	het		0.0000		100.0000	0	0	0	0	0
egarrison-hhga	INDEL	I16_PLUS	lowcmp_AllRepeats_gt200bp_gt95identity_merged	hetalt		0.0000		100.0000	0	0	0	0	0
egarrison-hhga	INDEL	I16_PLUS	lowcmp_AllRepeats_gt200bp_gt95identity_merged	homalt		0.0000		100.0000	0	0	0	0	0
egarrison-hhga	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	*		0.0000		100.0000	0	0	0	0	0
egarrison-hhga	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	het		0.0000		100.0000	0	0	0	0	0
egarrison-hhga	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	hetalt		0.0000		100.0000	0	0	0	0	0
egarrison-hhga	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	homalt		0.0000		100.0000	0	0	0	0	0
egarrison-hhga	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	*		0.0000		100.0000	0	0	0	0	0
egarrison-hhga	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	het		0.0000		100.0000	0	0	0	0	0
egarrison-hhga	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	hetalt		0.0000		100.0000	0	0	0	0	0
egarrison-hhga	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
egarrison-hhga	INDEL	I16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	homalt		0.0000		100.0000	0	0	0	0	0
egarrison-hhga	INDEL	I16_PLUS	lowcmp_SimpleRepeat_diTR_gt200	*		0.0000	0.0000	0.0000	0	0	0	0	0
egarrison-hhga	INDEL	I16_PLUS	lowcmp_SimpleRepeat_diTR_gt200	het		0.0000	0.0000	0.0000	0	0	0	0	0

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge