PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
16901-16950 / 86044 show all
eyeh-varpipeINDELD16_PLUSmap_l250_m1_e0homalt
0.0000
0.0000
97.2222
00011
100.0000
eyeh-varpipeINDELD16_PLUSmap_l250_m2_e0het
100.0000
100.0000
100.0000
93.7500
30300
eyeh-varpipeINDELD16_PLUSmap_l250_m2_e0homalt
66.6667
100.0000
50.0000
95.0000
10111
100.0000
eyeh-varpipeINDELD16_PLUSmap_l250_m2_e1het
100.0000
100.0000
100.0000
93.7500
30300
eyeh-varpipeINDELD16_PLUSmap_l250_m2_e1homalt
66.6667
100.0000
50.0000
95.1220
10111
100.0000
eyeh-varpipeINDELD16_PLUSsegdupwithalt*
0.0000
100.0000
00000
eyeh-varpipeINDELD16_PLUSsegdupwithalthet
0.0000
100.0000
00000
eyeh-varpipeINDELD16_PLUSsegdupwithalthetalt
0.0000
100.0000
00000
eyeh-varpipeINDELD16_PLUSsegdupwithalthomalt
0.0000
100.0000
00000
eyeh-varpipeINDELD16_PLUStech_badpromotershetalt
0.0000
0.0000
0.0000
00000
eyeh-varpipeINDELD16_PLUStech_badpromotershomalt
0.0000
0.0000
0.0000
00011
100.0000
eyeh-varpipeINDELD1_5decoy*
96.0000
100.0000
92.3077
99.7796
401211
100.0000
eyeh-varpipeINDELD1_5decoyhet
100.0000
100.0000
100.0000
99.8141
20700
eyeh-varpipeINDELD1_5decoyhetalt
100.0000
100.0000
100.0000
99.6732
10100
eyeh-varpipeINDELD1_5decoyhomalt
88.8889
100.0000
80.0000
99.7263
10411
100.0000
eyeh-varpipeINDELD1_5func_cdshet
98.3051
100.0000
96.6667
34.3066
8508732
66.6667
eyeh-varpipeINDELD1_5func_cdshetalt
0.0000
100.0000
00000
eyeh-varpipeINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
98.7013
10100
eyeh-varpipeINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
86.9565
100.0000
76.9231
97.6059
201033
100.0000
eyeh-varpipeINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
94.5455
100.0000
89.6552
98.1931
1002633
100.0000
eyeh-varpipeINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
98.5075
701500
eyeh-varpipeINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
98.5915
10100
eyeh-varpipeINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
86.9565
100.0000
76.9231
97.5425
201033
100.0000
eyeh-varpipeINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
eyeh-varpipeINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
eyeh-varpipeINDELD1_5lowcmp_SimpleRepeat_diTR_gt200*
0.0000
100.0000
00000
eyeh-varpipeINDELD1_5lowcmp_SimpleRepeat_diTR_gt200het
0.0000
100.0000
00000
eyeh-varpipeINDELD1_5lowcmp_SimpleRepeat_diTR_gt200hetalt
0.0000
0.0000
0.0000
00000
eyeh-varpipeINDELD1_5lowcmp_SimpleRepeat_diTR_gt200homalt
0.0000
0.0000
0.0000
00000
eyeh-varpipeINDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10het
0.0000
0.0000
98.2249
99.6798
0016632
66.6667
eyeh-varpipeINDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
0.0000
84.0909
99.9156
003777
100.0000
eyeh-varpipeINDELD1_5lowcmp_SimpleRepeat_quadTR_gt200*
0.0000
100.0000
00000
eyeh-varpipeINDELD1_5lowcmp_SimpleRepeat_quadTR_gt200het
0.0000
100.0000
00000
eyeh-varpipeINDELD1_5lowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
eyeh-varpipeINDELD1_5lowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
eyeh-varpipeINDELD1_5lowcmp_SimpleRepeat_triTR_51to200homalt
42.6230
100.0000
27.0833
34.2466
130133531
88.5714
eyeh-varpipeINDELD1_5lowcmp_SimpleRepeat_triTR_gt200*
0.0000
0.0000
0.0000
00000
eyeh-varpipeINDELD1_5lowcmp_SimpleRepeat_triTR_gt200het
0.0000
0.0000
0.0000
00000
eyeh-varpipeINDELD1_5lowcmp_SimpleRepeat_triTR_gt200hetalt
0.0000
0.0000
0.0000
00000
eyeh-varpipeINDELD1_5lowcmp_SimpleRepeat_triTR_gt200homalt
0.0000
0.0000
0.0000
00000
eyeh-varpipeINDELD1_5map_l125_m0_e0hetalt
100.0000
100.0000
100.0000
96.2441
30800
eyeh-varpipeINDELD1_5map_l150_m0_e0hetalt
100.0000
100.0000
100.0000
97.3333
20400
eyeh-varpipeINDELD1_5map_l250_m0_e0hetalt
0.0000
100.0000
00000
eyeh-varpipeINDELD1_5map_l250_m0_e0homalt
97.7778
100.0000
95.6522
97.5506
1302211
100.0000
eyeh-varpipeINDELD1_5segduphomalt
97.2973
100.0000
94.7368
94.2878
35903782120
95.2381
eyeh-varpipeINDELD1_5segdupwithalt*
100.0000
100.0000
100.0000
99.9794
10300
eyeh-varpipeINDELD1_5segdupwithalthet
100.0000
100.0000
100.0000
99.9761
10200
eyeh-varpipeINDELD1_5segdupwithalthetalt
0.0000
0.0000
100.0000
99.8771
00100
eyeh-varpipeINDELD1_5segdupwithalthomalt
0.0000
100.0000
00000
eyeh-varpipeINDELD1_5tech_badpromotershet
100.0000
100.0000
100.0000
52.9412
80800