PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
14301-14350 / 86044 show all
bgallagher-sentieonINDELC6_15tech_badpromotershetalt
0.0000
0.0000
0.0000
00000
bgallagher-sentieonINDELC6_15tech_badpromotershomalt
0.0000
0.0000
0.0000
00000
bgallagher-sentieonINDELD16_PLUSHG002compoundhethomalt
39.0244
100.0000
24.2424
67.9612
8082525
100.0000
bgallagher-sentieonINDELD16_PLUSdecoy*
100.0000
100.0000
100.0000
99.2718
60600
bgallagher-sentieonINDELD16_PLUSdecoyhet
100.0000
100.0000
100.0000
99.3162
40400
bgallagher-sentieonINDELD16_PLUSdecoyhetalt
0.0000
100.0000
00000
bgallagher-sentieonINDELD16_PLUSdecoyhomalt
100.0000
100.0000
100.0000
99.0244
20200
bgallagher-sentieonINDELD16_PLUSfunc_cds*
100.0000
100.0000
100.0000
79.6610
1201200
bgallagher-sentieonINDELD16_PLUSfunc_cdshet
100.0000
100.0000
100.0000
81.8182
80800
bgallagher-sentieonINDELD16_PLUSfunc_cdshetalt
0.0000
0.0000
0.0000
00000
bgallagher-sentieonINDELD16_PLUSfunc_cdshomalt
100.0000
100.0000
100.0000
73.3333
40400
bgallagher-sentieonINDELD16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_merged*
88.8889
100.0000
80.0000
99.3880
40410
0.0000
bgallagher-sentieonINDELD16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
99.8333
10100
bgallagher-sentieonINDELD16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
93.3333
10100
bgallagher-sentieonINDELD16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
80.0000
100.0000
66.6667
98.5149
20210
0.0000
bgallagher-sentieonINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
88.8889
100.0000
80.0000
99.3711
40410
0.0000
bgallagher-sentieonINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
99.8282
10100
bgallagher-sentieonINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
92.3077
10100
bgallagher-sentieonINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
80.0000
100.0000
66.6667
98.5000
20210
0.0000
bgallagher-sentieonINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
72.2892
1902300
bgallagher-sentieonINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.7238
100.0000
99.4490
62.9592
361036121
50.0000
bgallagher-sentieonINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
44.0000
1201400
bgallagher-sentieonINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.7636
100.0000
99.5283
47.2637
211021110
0.0000
bgallagher-sentieonINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
bgallagher-sentieonINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
bgallagher-sentieonINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
bgallagher-sentieonINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
bgallagher-sentieonINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10*
97.7528
100.0000
95.6044
84.1463
8708740
0.0000
bgallagher-sentieonINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10het
96.9697
100.0000
94.1176
86.7188
5204830
0.0000
bgallagher-sentieonINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
54.2857
1201600
bgallagher-sentieonINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10homalt
97.8723
100.0000
95.8333
84.5161
2302310
0.0000
bgallagher-sentieonINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10hetalt
100.0000
100.0000
100.0000
92.4370
90900
bgallagher-sentieonINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10homalt
100.0000
100.0000
100.0000
97.7099
1501500
bgallagher-sentieonINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_11to50homalt
99.3521
100.0000
98.7124
71.6889
230023032
66.6667
bgallagher-sentieonINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_gt200*
0.0000
100.0000
00000
bgallagher-sentieonINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_gt200het
0.0000
0.0000
0.0000
00000
bgallagher-sentieonINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
bgallagher-sentieonINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
100.0000
00000
bgallagher-sentieonINDELD16_PLUSlowcmp_SimpleRepeat_triTR_11to50*
99.3671
100.0000
98.7421
68.1363
157015720
0.0000
bgallagher-sentieonINDELD16_PLUSlowcmp_SimpleRepeat_triTR_11to50het
98.3051
100.0000
96.6667
79.3814
6105820
0.0000
bgallagher-sentieonINDELD16_PLUSlowcmp_SimpleRepeat_triTR_11to50hetalt
100.0000
100.0000
100.0000
22.8571
5105400
bgallagher-sentieonINDELD16_PLUSlowcmp_SimpleRepeat_triTR_11to50homalt
100.0000
100.0000
100.0000
67.3913
4504500
bgallagher-sentieonINDELD16_PLUSlowcmp_SimpleRepeat_triTR_51to200homalt
96.2963
100.0000
92.8571
50.0000
1301311
100.0000
bgallagher-sentieonINDELD16_PLUSmap_l100_m0_e0hetalt
100.0000
100.0000
100.0000
90.7407
40500
bgallagher-sentieonINDELD16_PLUSmap_l125_m0_e0*
92.3077
100.0000
85.7143
96.9298
1201220
0.0000
bgallagher-sentieonINDELD16_PLUSmap_l125_m0_e0het
90.0000
100.0000
81.8182
96.7836
90920
0.0000
bgallagher-sentieonINDELD16_PLUSmap_l125_m0_e0hetalt
100.0000
100.0000
100.0000
96.6667
10100
bgallagher-sentieonINDELD16_PLUSmap_l125_m0_e0homalt
100.0000
100.0000
100.0000
97.6190
20200
bgallagher-sentieonINDELD16_PLUSmap_l125_m1_e0*
94.7368
100.0000
90.0000
96.5398
2702730
0.0000
bgallagher-sentieonINDELD16_PLUSmap_l125_m1_e0het
95.2381
100.0000
90.9091
96.5463
2002020
0.0000