PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 253 254 255 256 257 258 259 260 261 ... 1720 1721 » 12801-12850 / 86044 show all
anovak-vg	INDEL	D1_5	map_l150_m0_e0	hetalt	0.0000	100.0000	0.0000	0.0000	2	0	0	0	0
anovak-vg	INDEL	D1_5	map_l250_m0_e0	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
anovak-vg	INDEL	D1_5	segdupwithalt	*	100.0000	100.0000	100.0000	99.9942	1	0	1	0	0
anovak-vg	INDEL	D1_5	segdupwithalt	het	100.0000	100.0000	100.0000	99.9921	1	0	1	0	0
anovak-vg	INDEL	D1_5	segdupwithalt	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
anovak-vg	INDEL	D1_5	segdupwithalt	homalt		0.0000		100.0000	0	0	0	0	0
anovak-vg	INDEL	D6_15	decoy	het		0.0000	0.0000	99.8978	0	0	0	1	0	0.0000
anovak-vg	INDEL	D6_15	decoy	homalt		0.0000		100.0000	0	0	0	0	0
anovak-vg	INDEL	D6_15	lowcmp_AllRepeats_gt200bp_gt95identity_merged	het	66.6667	100.0000	50.0000	98.2143	3	0	1	1	1	100.0000
anovak-vg	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	het	66.6667	100.0000	50.0000	98.0769	2	0	1	1	1	100.0000
anovak-vg	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	homalt		0.0000		100.0000	0	0	0	0	0
anovak-vg	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	het		100.0000		100.0000	1	0	0	0	0
anovak-vg	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
anovak-vg	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_gt10	homalt	60.8696	100.0000	43.7500	99.4686	6	0	7	9	6	66.6667
anovak-vg	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_gt200	*		0.0000	0.0000	0.0000	0	0	0	0	0
anovak-vg	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_gt200	het		0.0000	0.0000	0.0000	0	0	0	0	0
anovak-vg	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_gt200	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
anovak-vg	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_gt200	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
anovak-vg	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_gt200	*		0.0000	0.0000	0.0000	0	0	0	0	0
anovak-vg	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_gt200	het		0.0000	0.0000	0.0000	0	0	0	0	0
anovak-vg	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_gt200	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
anovak-vg	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_gt200	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
anovak-vg	INDEL	D6_15	map_l150_m0_e0	homalt	93.3333	100.0000	87.5000	93.0435	7	0	7	1	1	100.0000
anovak-vg	INDEL	D6_15	map_l250_m0_e0	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
anovak-vg	INDEL	D6_15	map_l250_m0_e0	homalt	100.0000	100.0000	100.0000	96.7213	2	0	2	0	0
anovak-vg	INDEL	D6_15	map_l250_m1_e0	homalt	90.9091	100.0000	83.3333	94.2857	5	0	5	1	1	100.0000
anovak-vg	INDEL	D6_15	map_l250_m2_e0	homalt	92.3077	100.0000	85.7143	94.2149	6	0	6	1	1	100.0000
anovak-vg	INDEL	D6_15	map_l250_m2_e1	homalt	92.3077	100.0000	85.7143	94.2623	6	0	6	1	1	100.0000
anovak-vg	INDEL	D6_15	segdupwithalt	*		0.0000		100.0000	0	0	0	0	0
anovak-vg	INDEL	D6_15	segdupwithalt	het		0.0000		100.0000	0	0	0	0	0
anovak-vg	INDEL	D6_15	segdupwithalt	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
anovak-vg	INDEL	D6_15	segdupwithalt	homalt		0.0000		100.0000	0	0	0	0	0
anovak-vg	INDEL	I16_PLUS	HG002compoundhet	homalt	35.7724	100.0000	21.7822	38.4146	3	0	44	158	97	61.3924
anovak-vg	INDEL	I16_PLUS	decoy	*		0.0000		100.0000	0	0	0	0	0
anovak-vg	INDEL	I16_PLUS	decoy	het		0.0000		100.0000	0	0	0	0	0
anovak-vg	INDEL	I16_PLUS	decoy	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
anovak-vg	INDEL	I16_PLUS	decoy	homalt		0.0000		100.0000	0	0	0	0	0
anovak-vg	INDEL	I16_PLUS	lowcmp_AllRepeats_gt200bp_gt95identity_merged	*		0.0000		100.0000	0	0	0	0	0
anovak-vg	INDEL	I16_PLUS	lowcmp_AllRepeats_gt200bp_gt95identity_merged	het		0.0000		100.0000	0	0	0	0	0
anovak-vg	INDEL	I16_PLUS	lowcmp_AllRepeats_gt200bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
anovak-vg	INDEL	I16_PLUS	lowcmp_AllRepeats_gt200bp_gt95identity_merged	homalt		0.0000		100.0000	0	0	0	0	0
anovak-vg	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	*		0.0000		100.0000	0	0	0	0	0
anovak-vg	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	het		0.0000		100.0000	0	0	0	0	0
anovak-vg	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
anovak-vg	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	homalt		0.0000		100.0000	0	0	0	0	0
anovak-vg	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	*		0.0000	0.0000	0.0000	0	0	0	0	0
anovak-vg	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	het		0.0000	0.0000	0.0000	0	0	0	0	0
anovak-vg	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
anovak-vg	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
anovak-vg	INDEL	I16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	homalt		0.0000	0.0000	0.0000	0	0	0	0	0

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge