PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
9751-9800 / 86044 show all | |||||||||||||||
| jli-custom | SNP | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | SNP | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | SNP | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | SNP | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 64.2857 | 5 | 0 | 5 | 0 | 0 | ||
| jli-custom | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jli-custom | SNP | * | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | SNP | * | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | SNP | * | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jli-custom | SNP | * | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 100.0000 | 100.0000 | 100.0000 | 95.2381 | 9 | 0 | 9 | 0 | 0 | ||
| jli-custom | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 94.7368 | 7 | 0 | 7 | 0 | 0 | ||
| jli-custom | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jli-custom | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.4286 | 2 | 0 | 2 | 0 | 0 | ||
| jli-custom | SNP | * | map_l100_m0_e0 | hetalt | 96.9697 | 100.0000 | 94.1176 | 71.1864 | 16 | 0 | 16 | 1 | 1 | 100.0000 | |
| jli-custom | SNP | * | map_l100_m1_e0 | hetalt | 98.7952 | 100.0000 | 97.6190 | 72.5490 | 41 | 0 | 41 | 1 | 1 | 100.0000 | |
| jli-custom | SNP | * | map_l100_m2_e0 | hetalt | 98.8235 | 100.0000 | 97.6744 | 75.2874 | 42 | 0 | 42 | 1 | 1 | 100.0000 | |
| jli-custom | SNP | * | map_l100_m2_e1 | hetalt | 98.8506 | 100.0000 | 97.7273 | 74.8571 | 43 | 0 | 43 | 1 | 1 | 100.0000 | |
| jli-custom | SNP | * | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 79.0698 | 9 | 0 | 9 | 0 | 0 | ||
| jli-custom | SNP | * | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 74.1379 | 30 | 0 | 30 | 0 | 0 | ||
| jli-custom | SNP | * | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 78.4173 | 30 | 0 | 30 | 0 | 0 | ||
| jli-custom | SNP | * | map_l125_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 78.4173 | 30 | 0 | 30 | 0 | 0 | ||
| jli-custom | SNP | * | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.1765 | 3 | 0 | 3 | 0 | 0 | ||
| jli-custom | SNP | * | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 78.4946 | 20 | 0 | 20 | 0 | 0 | ||
| jli-custom | SNP | * | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 81.9820 | 20 | 0 | 20 | 0 | 0 | ||
| jli-custom | SNP | * | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 81.9820 | 20 | 0 | 20 | 0 | 0 | ||
| jli-custom | SNP | * | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | SNP | * | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.8367 | 4 | 0 | 4 | 0 | 0 | ||
| jli-custom | SNP | * | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.5254 | 5 | 0 | 5 | 0 | 0 | ||
| jli-custom | SNP | * | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.5254 | 5 | 0 | 5 | 0 | 0 | ||
| jli-custom | SNP | * | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.1429 | 7 | 0 | 7 | 0 | 0 | ||
| jli-custom | SNP | * | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | SNP | * | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | SNP | * | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | SNP | * | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | SNP | * | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| jli-custom | SNP | ti | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | SNP | ti | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | SNP | ti | decoy | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | SNP | ti | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | SNP | ti | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 55.5556 | 8 | 0 | 8 | 0 | 0 | ||
| jli-custom | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | SNP | ti | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | SNP | ti | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | SNP | ti | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | SNP | ti | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 100.0000 | 100.0000 | 100.0000 | 85.3659 | 12 | 0 | 12 | 0 | 0 | ||
| jli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| jli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||