PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
85801-85850 / 86044 show all
eyeh-varpipeINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
75.9304
73.7693
78.2218
69.0738
4820917142620081726416584
96.0612
eyeh-varpipeINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
75.9304
73.7693
78.2218
69.0738
4820917142620081726416584
96.0612
astatham-gatkSNP*map_siren*
93.7139
88.2540
99.8939
58.6796
1290521717612902913767
48.9051
ghariani-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
47.3491
46.0834
48.6863
59.5527
1474317249147321552715257
98.2611
gduggal-bwavardSNP**het
99.2301
99.0784
99.3822
26.2938
1856334172671845056114693208
27.9711
gduggal-snapvardINDEL*HG002compoundhet*
47.5012
42.0784
54.5285
56.5286
1260517351246302053916069
78.2365
ckim-isaacSNPtv*het
98.4858
97.0571
99.9572
19.2906
5742911741357457624632
13.0081
mlin-fermikitSNPtimap_sirenhet
83.4382
72.0464
99.1091
46.3223
44944174384494440415
3.7129
ckim-vqsrSNPtimap_l100_m1_e0*
77.5493
63.5768
99.3932
81.5266
30473174583046818613
6.9893
ciseli-customSNP*map_siren*
89.7321
87.9989
91.5349
59.0239
12867917549128115118482967
25.0422
ckim-isaacSNP*map_sirenhomalt
81.0505
68.1522
99.9707
46.5592
3759017566375911111
100.0000
gduggal-snapplatINDELI6_15**
41.4207
29.2310
71.0492
57.1777
72561756771172900649
22.3793
ckim-vqsrSNPtimap_l100_m2_e0*
77.9188
64.0796
99.3822
82.5443
31374175873136919515
7.6923
ckim-vqsrSNP**het
99.4736
99.0611
99.8894
26.9578
18559961759118558762054101
4.9172
mlin-fermikitINDEL***
95.5997
94.8918
96.3183
54.9677
326942176003265721248312097
96.9078
mlin-fermikitSNP*map_l150_m1_e0*
56.5558
42.3405
85.1406
61.3631
12960176491295522611991
88.0584
ckim-vqsrSNPtimap_l100_m2_e1*
78.0470
64.2498
99.3903
82.5096
31794176913178919515
7.6923
gduggal-snapplatSNPtv**
98.6169
98.1754
99.0623
31.7051
9520051769395236890151026
11.3810
jpowers-varprowlINDELD1_5**
89.7951
87.9294
91.7417
58.6226
129032177131289091160411168
96.2427
mlin-fermikitSNP*map_l100_m0_e0*
59.6148
45.9548
84.8308
53.4081
15092177491508826982419
89.6590
gduggal-snapfbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
77.3261
72.6018
82.7081
62.1191
474461790552604109985193
47.2177
gduggal-snapfbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
77.3261
72.6018
82.7081
62.1191
474461790552604109985193
47.2177
mlin-fermikitSNP*map_l150_m2_e0*
57.7918
43.6268
85.5779
66.0006
13896179561389123412055
87.7830
ckim-vqsrSNP*HG002complexvar*
98.7826
97.6098
99.9840
19.7255
7363501803173620111858
49.1525
ciseli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
53.8310
52.3323
55.4180
55.7723
1983518067201501621013033
80.4010
gduggal-snapvardINDELI1_5**
88.2138
87.9937
88.4349
55.6066
132574180891332971743213523
77.5757
mlin-fermikitSNP*map_l150_m2_e1*
57.9744
43.8280
85.6051
66.1929
14117180931411223732083
87.7792
anovak-vgINDEL*HG002complexvarhet
72.0208
60.7851
88.3522
57.0408
28090181223012939722361
59.4411
mlin-fermikitSNPtv**
98.7665
98.1308
99.4104
19.3147
9515721812695150656434116
72.9399
gduggal-bwaplatSNP*map_l125_m1_e0*
74.4387
59.4965
99.4030
86.9422
26968183592697516246
28.3951
gduggal-snapvardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
54.3999
51.2849
57.9178
44.7526
1943818464330232399420921
87.1926
gduggal-bwavardINDELI1_5**
89.8158
87.7423
91.9898
54.5219
132196184681312061142510755
94.1357
gduggal-bwaplatSNP*map_l125_m2_e0*
75.1671
60.4306
99.4087
87.7400
28235184882824216847
27.9762
gduggal-bwaplatSNP*map_l125_m2_e1*
75.3654
60.6881
99.4067
87.7186
28646185562865317147
27.4854
anovak-vgINDEL*HG002compoundhethetalt
0.0000
25.9095
0.0000
0.0000
652418656000
anovak-vgINDEL**hetalt
0.0000
25.9341
0.0000
0.0000
654518692000
ciseli-customINDELI6_15**
35.4599
24.6948
62.8636
46.3768
613018693609436003400
94.4444
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
43.8182
41.5354
46.3666
49.7641
1328818704132781535915221
99.1015
mlin-fermikitSNPtimap_l100_m1_e0*
73.0893
60.7644
91.6861
50.6018
29125188062912526412337
88.4892
gduggal-snapplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
44.0360
38.0774
52.2053
83.4017
116061887414180129822052
15.8065
gduggal-snapplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
44.0360
38.0774
52.2053
83.4017
116061887414180129822052
15.8065
mlin-fermikitSNPtimap_l100_m2_e0*
73.5756
61.3876
91.8021
54.4848
30056189053005626842362
88.0030
mlin-fermikitSNPtimap_l100_m2_e1*
73.7873
61.6490
91.8775
54.5530
30507189783050726972372
87.9496
gduggal-snapplatINDEL*HG002compoundhet*
42.2745
36.5854
50.0587
72.5688
109611899911522114955404
47.0117
asubramanian-gatkSNP*map_l125_m1_e0het
49.6482
33.0516
99.7236
92.3828
9384190089381266
23.0769
ckim-isaacSNP*map_l125_m1_e0*
73.2800
57.9125
99.7492
70.8000
2625019077262526616
24.2424
gduggal-snapplatSNP*HG002complexvar*
97.9967
97.4708
98.5284
22.9400
73530519080736073109941866
16.9729
ciseli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
56.8514
55.5879
58.1738
61.2449
2408919246243941753913551
77.2621
gduggal-snapvardSNP**het
98.8907
98.9717
98.8098
27.4520
1854334192661842523221943216
14.4904
asubramanian-gatkSNP*map_l125_m2_e0het
50.9572
34.2281
99.6721
92.5837
100351928310032338
24.2424