PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
85601-85650 / 86044 show all
mlin-fermikitSNPtvmap_siren*
81.3085
72.1446
93.1393
50.3116
33136127943312524402002
82.0492
asubramanian-gatkSNP*map_l125_m2_e1homalt
42.1801
26.7283
99.9787
88.0838
468612846468610
0.0000
ciseli-customSNPtiHG002complexvarhet
96.3296
95.9112
96.7516
18.3708
3018961287029942210053353
3.5114
gduggal-bwaplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
81.2482
70.2896
96.2549
70.8872
3046012875304561185636
53.6709
jpowers-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
42.1139
37.4782
48.0583
42.5126
771912877771083338271
99.2560
gduggal-snapvardINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
73.0618
58.0378
98.5812
63.1306
178531290828349408382
93.6275
anovak-vgINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
81.5683
79.9506
83.2528
70.9561
515131291852192104997538
71.7973
gduggal-snapvardINDELD1_5**
87.8248
91.1601
84.7249
55.7284
133771129721600642885822853
79.1912
mlin-fermikitSNPtimap_l100_m1_e0het
71.7393
56.3489
98.6955
52.5376
1687213070168722239
4.0359
jpowers-varprowlINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
45.9726
41.2090
51.9814
51.1983
916913081915684588386
99.1487
gduggal-snapvardINDEL**het
84.4835
93.2561
77.2195
60.6809
181038130922281316730150370
74.8429
mlin-fermikitSNPtimap_l100_m2_e0het
72.2999
57.0570
98.6561
56.4180
1747213150174722389
3.7815
ciseli-customINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
79.4183
79.5592
79.2778
75.7467
512601317051089133548419
63.0448
ckim-isaacSNPtimap_sirenhet
88.1134
78.8433
99.8538
52.2793
491841319849191726
8.3333
gduggal-snapvardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
42.4269
27.3328
94.7531
66.0231
4965132005219289255
88.2353
gduggal-snapvardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
42.4269
27.3328
94.7531
66.0231
4965132005219289255
88.2353
mlin-fermikitSNPtimap_l100_m2_e1het
72.5397
57.3547
98.6610
56.4877
1775713203177572419
3.7344
ciseli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
0.0000
4.0395
0.0000
0.0000
55613208000
jmaeng-gatkSNP*map_l100_m1_e0*
89.2166
81.7563
98.1753
78.5878
591941320959183110078
7.0909
ckim-gatkSNP*map_l100_m1_e0*
89.2398
81.7300
98.2693
78.3708
591751322859164104284
8.0614
qzeng-customSNPtimap_siren*
92.5421
86.8188
99.0732
61.8902
871271322886370808570
70.5446
jmaeng-gatkSNP*map_l100_m2_e0*
89.4136
82.0994
98.1585
79.7900
607241324060713113979
6.9359
ckim-gatkSNP*map_l100_m2_e0*
89.4294
82.0710
98.2373
79.5869
607031326160692108986
7.8972
ciseli-customSNP*map_l100_m1_e0*
84.9995
81.6845
88.5950
70.0712
59142132615896075902012
26.5086
gduggal-snapvardINDEL*lowcmp_SimpleRepeat_diTR_11to50*
65.2231
63.7325
66.7851
42.6875
2332113271407732027818291
90.2012
jmaeng-gatkSNP*map_l100_m2_e1*
89.5016
82.2404
98.1693
79.7702
614641327361453114679
6.8935
ckim-gatkSNP*map_l100_m2_e1*
89.5170
82.2096
98.2503
79.5686
614411329661430109486
7.8611
ciseli-customSNP*map_l100_m2_e0*
85.1771
81.9318
88.6900
71.8362
60600133646041377042033
26.3889
ckim-vqsrSNPtimap_l125_m1_e0*
70.1902
54.3480
99.0678
87.5048
1594313392159411504
2.6667
gduggal-bwaplatSNP*map_sirenhomalt
86.1632
75.7053
99.9736
58.6738
417561340041721119
81.8182
ciseli-customSNP*map_l100_m2_e1*
85.2411
82.0102
88.7370
71.8319
61292134456109977552048
26.4088
ciseli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
0.0000
4.0479
0.0000
0.0000
56813464000
gduggal-snapplatSNP*HG002complexvarhet
97.4346
97.1046
97.7668
23.9217
45202213478453020103481516
14.6502
gduggal-snapvardINDELI6_15**
50.7754
45.6827
57.1459
41.2412
113381348113483101118109
80.1998
ckim-isaacSNP*map_l100_m0_e0*
74.0949
58.9233
99.7886
67.9602
193511349019354419
21.9512
gduggal-snapvardSNPti*het
98.9307
98.9471
98.9142
25.7701
1268399134971263991138752046
14.7459
eyeh-varpipeINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
71.2051
68.6858
73.9162
57.7097
2976513570418411476514397
97.5076
ckim-vqsrSNPtimap_l125_m2_e0*
70.8577
55.1491
99.0796
88.2228
1668713571166851555
3.2258
gduggal-bwaplatSNPtimap_l100_m1_e0*
83.2803
71.6572
99.4040
79.8206
34346135853435720664
31.0680
gduggal-bwaplatSNPtimap_l100_m2_e0*
83.6206
72.1656
99.3982
81.0322
35333136283534421467
31.3084
ckim-isaacSNPtv*homalt
98.1562
96.3855
99.9931
16.5795
363492136313635152518
72.0000
eyeh-varpipeINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
87.5783
85.5583
89.6959
70.2246
80809136401390871597815625
97.7907
ckim-vqsrSNPtimap_l125_m2_e1*
71.0090
55.3306
99.0860
88.2132
1691413655169121565
3.2051
gduggal-snapfbINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
88.3624
85.5319
91.3867
71.3799
80784136658551680604292
53.2506
ghariani-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
0.0000
0.6902
0.0000
0.0000
9513669000
gduggal-bwaplatSNPtimap_l100_m2_e1*
83.7577
72.3674
99.4034
80.9971
35811136743582221567
31.1628
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
0.0000
0.6030
0.0000
0.0000
8313681000
anovak-vgSNP*map_siren*
88.0035
90.6441
85.5124
59.7358
13254713681130863221715290
23.8600
ckim-vqsrSNPtvmap_siren*
82.2625
70.1676
99.3954
75.7194
3222813702322211967
3.5714
gduggal-snapplatSNP**homalt
99.3703
98.8374
99.9089
19.1469
11664421372011662141063359
33.7723