PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
84051-84100 / 86044 show all | |||||||||||||||
| gduggal-bwafb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 91.6563 | 86.8570 | 97.0171 | 59.4271 | 26474 | 4006 | 42997 | 1322 | 971 | 73.4493 | |
| gduggal-bwafb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 91.6563 | 86.8570 | 97.0171 | 59.4271 | 26474 | 4006 | 42997 | 1322 | 971 | 73.4493 | |
| ckim-gatk | SNP | * | HG002complexvar | homalt | 99.2945 | 98.6114 | 99.9870 | 20.0389 | 284567 | 4007 | 284543 | 37 | 31 | 83.7838 | |
| gduggal-snapfb | SNP | ti | * | * | 99.4335 | 99.8078 | 99.0620 | 21.3991 | 2081510 | 4008 | 2082093 | 19715 | 1288 | 6.5331 | |
| ciseli-custom | SNP | tv | map_l100_m1_e0 | het | 78.9799 | 73.9962 | 84.6833 | 75.5859 | 11408 | 4009 | 11406 | 2063 | 73 | 3.5385 | |
| anovak-vg | SNP | * | map_l100_m1_e0 | homalt | 91.6965 | 85.1461 | 99.3387 | 58.6113 | 22992 | 4011 | 22684 | 151 | 130 | 86.0927 | |
| ciseli-custom | SNP | ti | map_l150_m2_e0 | het | 74.3678 | 68.8533 | 80.8425 | 84.6368 | 8869 | 4012 | 8866 | 2101 | 62 | 2.9510 | |
| qzeng-custom | SNP | tv | map_l125_m1_e0 | * | 84.7104 | 74.9376 | 97.4144 | 82.6672 | 12002 | 4014 | 11981 | 318 | 271 | 85.2201 | |
| ghariani-varprowl | SNP | * | * | * | 99.3496 | 99.8685 | 98.8361 | 25.2137 | 3050577 | 4016 | 3051086 | 35930 | 2639 | 7.3448 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.2730 | 0.0000 | 0.0000 | 11 | 4018 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.2482 | 0.0000 | 0.0000 | 10 | 4019 | 0 | 0 | 0 | ||
| asubramanian-gatk | SNP | ti | map_l150_m0_e0 | het | 34.9037 | 21.1497 | 99.8148 | 97.0413 | 1078 | 4019 | 1078 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | * | * | 50.2841 | 36.9610 | 78.6262 | 37.5078 | 2357 | 4020 | 2358 | 641 | 639 | 99.6880 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.2234 | 0.0000 | 0.0000 | 9 | 4020 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 43.8042 | 29.8151 | 82.5243 | 69.3041 | 1709 | 4023 | 1700 | 360 | 316 | 87.7778 | |
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 79.1180 | 67.8700 | 94.8349 | 76.6136 | 8498 | 4023 | 8501 | 463 | 140 | 30.2376 | |
| ckim-gatk | SNP | * | map_l125_m0_e0 | het | 79.9330 | 68.2249 | 96.4920 | 90.8886 | 8640 | 4024 | 8637 | 314 | 30 | 9.5541 | |
| gduggal-bwaplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 92.4986 | 87.0629 | 98.6582 | 85.3332 | 27114 | 4029 | 27131 | 369 | 118 | 31.9783 | |
| gduggal-bwaplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 92.4986 | 87.0629 | 98.6582 | 85.3332 | 27114 | 4029 | 27131 | 369 | 118 | 31.9783 | |
| gduggal-snapplat | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 83.4678 | 77.0663 | 91.0292 | 80.6522 | 13539 | 4029 | 13577 | 1338 | 103 | 7.6981 | |
| jmaeng-gatk | SNP | * | map_l125_m0_e0 | het | 79.8036 | 68.1775 | 96.2100 | 91.1308 | 8634 | 4030 | 8631 | 340 | 27 | 7.9412 | |
| jpowers-varprowl | SNP | tv | * | het | 99.1037 | 99.3176 | 98.8908 | 29.6901 | 587657 | 4038 | 587824 | 6593 | 166 | 2.5178 | |
| gduggal-bwaplat | SNP | tv | HG002complexvar | homalt | 97.7875 | 95.7534 | 99.9100 | 24.5806 | 91072 | 4039 | 90999 | 82 | 77 | 93.9024 | |
| anovak-vg | SNP | tv | map_siren | * | 87.1130 | 91.2040 | 83.3733 | 62.1288 | 41890 | 4040 | 41755 | 8327 | 1807 | 21.7005 | |
| anovak-vg | SNP | * | map_l100_m2_e0 | homalt | 91.7943 | 85.3141 | 99.3397 | 61.4498 | 23481 | 4042 | 23170 | 154 | 133 | 86.3636 | |
| ciseli-custom | SNP | tv | map_l100_m2_e0 | het | 79.2677 | 74.3804 | 84.8423 | 77.0207 | 11735 | 4042 | 11732 | 2096 | 75 | 3.5782 | |
| anovak-vg | SNP | ti | map_siren | homalt | 94.0329 | 89.3343 | 99.2531 | 48.3941 | 33872 | 4044 | 33489 | 252 | 225 | 89.2857 | |
| gduggal-bwaplat | SNP | ti | map_l100_m0_e0 | homalt | 64.8122 | 47.9547 | 99.9463 | 76.1862 | 3728 | 4046 | 3722 | 2 | 2 | 100.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 78.5723 | 72.6344 | 85.5675 | 52.9869 | 10739 | 4046 | 10909 | 1840 | 1594 | 86.6304 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 49.7829 | 0.0000 | 0.0000 | 4012 | 4047 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 49.7829 | 0.0000 | 0.0000 | 4012 | 4047 | 0 | 0 | 0 | ||
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 87.0050 | 91.1424 | 83.2268 | 80.9890 | 41653 | 4048 | 41154 | 8294 | 340 | 4.0994 | |
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 87.0050 | 91.1424 | 83.2268 | 80.9890 | 41653 | 4048 | 41154 | 8294 | 340 | 4.0994 | |
| ciseli-custom | SNP | ti | map_l150_m2_e1 | het | 74.4004 | 68.8974 | 80.8587 | 84.6760 | 8967 | 4048 | 8964 | 2122 | 62 | 2.9218 | |
| ciseli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 72.5476 | 77.2827 | 68.3592 | 65.9014 | 13771 | 4048 | 14661 | 6786 | 3680 | 54.2293 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 77.1234 | 70.6347 | 84.9247 | 50.6689 | 9737 | 4048 | 9864 | 1751 | 1570 | 89.6630 | |
| asubramanian-gatk | SNP | ti | map_l250_m2_e1 | * | 33.6335 | 20.2325 | 99.6120 | 98.2384 | 1027 | 4049 | 1027 | 4 | 1 | 25.0000 | |
| qzeng-custom | SNP | tv | map_l125_m2_e0 | * | 85.0368 | 75.4382 | 97.4343 | 83.5735 | 12439 | 4050 | 12418 | 327 | 274 | 83.7920 | |
| gduggal-snapvard | INDEL | D6_15 | HG002compoundhet | hetalt | 0.0000 | 50.3006 | 0.0000 | 0.0000 | 4100 | 4051 | 0 | 0 | 0 | ||
| mlin-fermikit | INDEL | I1_5 | HG002compoundhet | * | 72.7922 | 67.2062 | 79.3909 | 62.5413 | 8304 | 4052 | 8290 | 2152 | 2132 | 99.0706 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 93.9659 | 93.6956 | 94.2379 | 71.6964 | 60369 | 4062 | 60447 | 3696 | 3375 | 91.3149 | |
| gduggal-bwaplat | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 83.8527 | 73.6525 | 97.3325 | 72.7994 | 11355 | 4062 | 11348 | 311 | 304 | 97.7492 | |
| ghariani-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 34.5163 | 33.2073 | 35.9327 | 70.3914 | 2020 | 4063 | 2009 | 3582 | 3513 | 98.0737 | |
| ciseli-custom | SNP | tv | map_l100_m2_e1 | het | 79.3676 | 74.5012 | 84.9142 | 77.0349 | 11874 | 4064 | 11871 | 2109 | 75 | 3.5562 | |
| qzeng-custom | SNP | ti | map_l100_m0_e0 | het | 81.5587 | 70.9290 | 95.9360 | 86.8580 | 9918 | 4065 | 9891 | 419 | 349 | 83.2936 | |
| anovak-vg | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 31.0550 | 0.0000 | 0.0000 | 1831 | 4065 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 31.0550 | 0.0000 | 0.0000 | 1831 | 4065 | 0 | 0 | 0 | ||
| anovak-vg | SNP | * | map_l100_m2_e1 | homalt | 91.8309 | 85.3756 | 99.3422 | 61.4163 | 23731 | 4065 | 23410 | 155 | 133 | 85.8065 | |
| gduggal-snapvard | INDEL | D6_15 | * | hetalt | 0.0000 | 50.2569 | 0.0000 | 0.0000 | 4108 | 4066 | 0 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 0.0000 | 0.0000 | 0.0000 | 0 | 4067 | 0 | 0 | 0 | |||