PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
84051-84100 / 86044 show all
gduggal-bwafbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
91.6563
86.8570
97.0171
59.4271
264744006429971322971
73.4493
gduggal-bwafbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
91.6563
86.8570
97.0171
59.4271
264744006429971322971
73.4493
ckim-gatkSNP*HG002complexvarhomalt
99.2945
98.6114
99.9870
20.0389
28456740072845433731
83.7838
gduggal-snapfbSNPti**
99.4335
99.8078
99.0620
21.3991
208151040082082093197151288
6.5331
ciseli-customSNPtvmap_l100_m1_e0het
78.9799
73.9962
84.6833
75.5859
11408400911406206373
3.5385
anovak-vgSNP*map_l100_m1_e0homalt
91.6965
85.1461
99.3387
58.6113
22992401122684151130
86.0927
ciseli-customSNPtimap_l150_m2_e0het
74.3678
68.8533
80.8425
84.6368
886940128866210162
2.9510
qzeng-customSNPtvmap_l125_m1_e0*
84.7104
74.9376
97.4144
82.6672
12002401411981318271
85.2201
ghariani-varprowlSNP***
99.3496
99.8685
98.8361
25.2137
305057740163051086359302639
7.3448
ghariani-varprowlINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
0.0000
0.2730
0.0000
0.0000
114018000
gduggal-bwavardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
0.0000
0.2482
0.0000
0.0000
104019000
asubramanian-gatkSNPtimap_l150_m0_e0het
34.9037
21.1497
99.8148
97.0413
10784019107822
100.0000
eyeh-varpipeINDELI16_PLUS**
50.2841
36.9610
78.6262
37.5078
235740202358641639
99.6880
jpowers-varprowlINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
0.0000
0.2234
0.0000
0.0000
94020000
jpowers-varprowlINDELI1_5lowcmp_SimpleRepeat_diTR_11to50*
43.8042
29.8151
82.5243
69.3041
170940231700360316
87.7778
gduggal-bwaplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
79.1180
67.8700
94.8349
76.6136
849840238501463140
30.2376
ckim-gatkSNP*map_l125_m0_e0het
79.9330
68.2249
96.4920
90.8886
86404024863731430
9.5541
gduggal-bwaplatSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331*
92.4986
87.0629
98.6582
85.3332
27114402927131369118
31.9783
gduggal-bwaplatSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
92.4986
87.0629
98.6582
85.3332
27114402927131369118
31.9783
gduggal-snapplatSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
83.4678
77.0663
91.0292
80.6522
135394029135771338103
7.6981
jmaeng-gatkSNP*map_l125_m0_e0het
79.8036
68.1775
96.2100
91.1308
86344030863134027
7.9412
jpowers-varprowlSNPtv*het
99.1037
99.3176
98.8908
29.6901
58765740385878246593166
2.5178
gduggal-bwaplatSNPtvHG002complexvarhomalt
97.7875
95.7534
99.9100
24.5806
910724039909998277
93.9024
anovak-vgSNPtvmap_siren*
87.1130
91.2040
83.3733
62.1288
4189040404175583271807
21.7005
anovak-vgSNP*map_l100_m2_e0homalt
91.7943
85.3141
99.3397
61.4498
23481404223170154133
86.3636
ciseli-customSNPtvmap_l100_m2_e0het
79.2677
74.3804
84.8423
77.0207
11735404211732209675
3.5782
anovak-vgSNPtimap_sirenhomalt
94.0329
89.3343
99.2531
48.3941
33872404433489252225
89.2857
gduggal-bwaplatSNPtimap_l100_m0_e0homalt
64.8122
47.9547
99.9463
76.1862
37284046372222
100.0000
ndellapenna-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
78.5723
72.6344
85.5675
52.9869
1073940461090918401594
86.6304
gduggal-snapvardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
0.0000
49.7829
0.0000
0.0000
40124047000
gduggal-snapvardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
49.7829
0.0000
0.0000
40124047000
gduggal-snapvardSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
87.0050
91.1424
83.2268
80.9890
416534048411548294340
4.0994
gduggal-snapvardSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
87.0050
91.1424
83.2268
80.9890
416534048411548294340
4.0994
ciseli-customSNPtimap_l150_m2_e1het
74.4004
68.8974
80.8587
84.6760
896740488964212262
2.9218
ciseli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
72.5476
77.2827
68.3592
65.9014
1377140481466167863680
54.2293
egarrison-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
77.1234
70.6347
84.9247
50.6689
97374048986417511570
89.6630
asubramanian-gatkSNPtimap_l250_m2_e1*
33.6335
20.2325
99.6120
98.2384
10274049102741
25.0000
qzeng-customSNPtvmap_l125_m2_e0*
85.0368
75.4382
97.4343
83.5735
12439405012418327274
83.7920
gduggal-snapvardINDELD6_15HG002compoundhethetalt
0.0000
50.3006
0.0000
0.0000
41004051000
mlin-fermikitINDELI1_5HG002compoundhet*
72.7922
67.2062
79.3909
62.5413
83044052829021522132
99.0706
egarrison-hhgaINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
93.9659
93.6956
94.2379
71.6964
6036940626044736963375
91.3149
gduggal-bwaplatINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
83.8527
73.6525
97.3325
72.7994
11355406211348311304
97.7492
ghariani-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
34.5163
33.2073
35.9327
70.3914
20204063200935823513
98.0737
ciseli-customSNPtvmap_l100_m2_e1het
79.3676
74.5012
84.9142
77.0349
11874406411871210975
3.5562
qzeng-customSNPtimap_l100_m0_e0het
81.5587
70.9290
95.9360
86.8580
991840659891419349
83.2936
anovak-vgINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
0.0000
31.0550
0.0000
0.0000
18314065000
anovak-vgINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
31.0550
0.0000
0.0000
18314065000
anovak-vgSNP*map_l100_m2_e1homalt
91.8309
85.3756
99.3422
61.4163
23731406523410155133
85.8065
gduggal-snapvardINDELD6_15*hetalt
0.0000
50.2569
0.0000
0.0000
41084066000
gduggal-snapplatINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
0.0000
0.0000
0.0000
04067000