PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
8351-8400 / 86044 show all
jli-customINDELI1_5map_l250_m1_e0hetalt
100.0000
100.0000
100.0000
97.9592
20200
jli-customINDELI1_5map_l250_m1_e0homalt
97.7778
100.0000
95.6522
93.3237
4404422
100.0000
jli-customINDELI1_5map_l250_m2_e0hetalt
100.0000
100.0000
100.0000
98.3471
20200
jli-customINDELI1_5map_l250_m2_e0homalt
97.8261
100.0000
95.7447
94.2822
4504522
100.0000
jli-customINDELI1_5map_l250_m2_e1hetalt
100.0000
100.0000
100.0000
98.3740
20200
jli-customINDELI1_5map_l250_m2_e1homalt
97.8723
100.0000
95.8333
94.3396
4604622
100.0000
jli-customINDELI1_5segdupwithalt*
0.0000
100.0000
00000
jli-customINDELI1_5segdupwithalthet
0.0000
100.0000
00000
jli-customINDELI1_5segdupwithalthetalt
0.0000
100.0000
00000
jli-customINDELI1_5segdupwithalthomalt
0.0000
100.0000
00000
jli-customINDELI1_5tech_badpromoters*
100.0000
100.0000
100.0000
52.1739
2202200
jli-customINDELI1_5tech_badpromotershet
100.0000
100.0000
100.0000
38.4615
80800
jli-customINDELI1_5tech_badpromotershetalt
100.0000
100.0000
100.0000
50.0000
10100
jli-customINDELI1_5tech_badpromotershomalt
100.0000
100.0000
100.0000
58.0645
1301300
jli-customINDELI6_15HG002compoundhethomalt
26.1603
100.0000
15.0485
64.4214
31031175175
100.0000
jli-customINDELI6_15decoy*
0.0000
100.0000
00000
jli-customINDELI6_15decoyhet
0.0000
100.0000
00000
jli-customINDELI6_15decoyhetalt
0.0000
100.0000
00000
jli-customINDELI6_15decoyhomalt
0.0000
100.0000
00000
jli-customINDELI6_15func_cdshomalt
96.7742
100.0000
93.7500
40.7407
1501511
100.0000
jli-customINDELI6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
90.7692
100.0000
83.0986
73.1061
590591212
100.0000
jli-customINDELI6_15lowcmp_AllRepeats_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
jli-customINDELI6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
jli-customINDELI6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
jli-customINDELI6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
jli-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
96.0000
100.0000
92.3077
65.1786
3603633
100.0000
jli-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
jli-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
jli-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
jli-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
jli-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.4595
100.0000
98.9247
66.6667
9209211
100.0000
jli-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
67.3077
6806800
jli-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
85.7143
100.0000
75.0000
75.9398
2402488
100.0000
jli-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
jli-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
jli-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
jli-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
jli-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
94.6429
100.0000
89.8305
67.3582
21102122424
100.0000
jli-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
95.9391
100.0000
92.1951
65.8902
18801891616
100.0000
jli-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
95.8525
100.0000
92.0354
67.8977
31103122727
100.0000
jli-customINDELI6_15lowcmp_SimpleRepeat_diTR_11to50homalt
96.2264
100.0000
92.7273
75.4829
15301531212
100.0000
jli-customINDELI6_15lowcmp_SimpleRepeat_diTR_51to200homalt
0.0000
0.0000
81.2500
00033
100.0000
jli-customINDELI6_15lowcmp_SimpleRepeat_homopolymer_gt10*
100.0000
100.0000
100.0000
99.8500
20200
jli-customINDELI6_15lowcmp_SimpleRepeat_homopolymer_gt10het
0.0000
100.0000
00000
jli-customINDELI6_15lowcmp_SimpleRepeat_homopolymer_gt10hetalt
100.0000
100.0000
100.0000
99.4203
20200
jli-customINDELI6_15lowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
100.0000
00000
jli-customINDELI6_15lowcmp_SimpleRepeat_quadTR_11to50homalt
99.3103
100.0000
98.6301
65.2381
216021633
100.0000
jli-customINDELI6_15lowcmp_SimpleRepeat_quadTR_51to200homalt
0.0000
0.0000
95.8333
00011
100.0000
jli-customINDELI6_15lowcmp_SimpleRepeat_triTR_11to50homalt
100.0000
100.0000
100.0000
61.4379
5905900
jli-customINDELI6_15lowcmp_SimpleRepeat_triTR_51to200het
100.0000
100.0000
10000