PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
83851-83900 / 86044 show all | |||||||||||||||
| jmaeng-gatk | SNP | tv | map_l150_m1_e0 | * | 79.2356 | 67.0913 | 96.7482 | 88.9242 | 7321 | 3591 | 7319 | 246 | 7 | 2.8455 | |
| gduggal-snapvard | INDEL | I1_5 | HG002complexvar | * | 89.7354 | 89.2273 | 90.2494 | 52.3644 | 29768 | 3594 | 28665 | 3097 | 2248 | 72.5864 | |
| jpowers-varprowl | INDEL | * | HG002complexvar | hetalt | 0.0000 | 2.7305 | 0.0000 | 0.0000 | 101 | 3598 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | HG002complexvar | hetalt | 0.0000 | 2.6494 | 0.0000 | 0.0000 | 98 | 3601 | 0 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | map_l125_m1_e0 | het | 78.1031 | 64.4085 | 99.1939 | 89.8771 | 6522 | 3604 | 6522 | 53 | 13 | 24.5283 | |
| ciseli-custom | INDEL | I6_15 | HG002complexvar | * | 36.3268 | 24.7913 | 67.9389 | 56.5783 | 1188 | 3604 | 1157 | 546 | 471 | 86.2637 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 5.2037 | 0.0000 | 0.0000 | 198 | 3607 | 0 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | HG002compoundhet | hetalt | 70.7588 | 57.7252 | 91.3944 | 38.7805 | 4928 | 3609 | 1147 | 108 | 105 | 97.2222 | |
| ckim-gatk | SNP | tv | map_l150_m1_e0 | * | 79.1583 | 66.8988 | 96.9190 | 88.8068 | 7300 | 3612 | 7298 | 232 | 8 | 3.4483 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 70.5032 | 65.2830 | 76.6308 | 62.2986 | 6794 | 3613 | 8411 | 2565 | 1113 | 43.3918 | |
| ckim-isaac | SNP | ti | map_l100_m0_e0 | homalt | 69.6665 | 53.4731 | 99.9279 | 52.0793 | 4157 | 3617 | 4157 | 3 | 3 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | * | hetalt | 66.8619 | 57.6892 | 79.5031 | 50.4107 | 4933 | 3618 | 1152 | 297 | 287 | 96.6330 | |
| ciseli-custom | SNP | * | map_siren | homalt | 93.3935 | 93.4404 | 93.3467 | 52.8475 | 51538 | 3618 | 51210 | 3650 | 2749 | 75.3151 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 43.6603 | 29.2554 | 86.0104 | 46.9780 | 1497 | 3620 | 1494 | 243 | 208 | 85.5967 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 43.7158 | 29.2554 | 86.4426 | 46.4806 | 1497 | 3620 | 1492 | 234 | 208 | 88.8889 | |
| gduggal-bwaplat | SNP | tv | map_l125_m2_e0 | het | 78.7735 | 65.3227 | 99.2001 | 90.4805 | 6821 | 3621 | 6821 | 55 | 13 | 23.6364 | |
| jmaeng-gatk | SNP | tv | map_l150_m2_e0 | * | 79.9418 | 68.0934 | 96.7823 | 89.5425 | 7732 | 3623 | 7730 | 257 | 7 | 2.7237 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 63.4351 | 46.7851 | 98.4838 | 42.8226 | 3187 | 3625 | 2793 | 43 | 38 | 88.3721 | |
| gduggal-bwaplat | SNP | tv | map_l125_m2_e1 | het | 78.9711 | 65.6022 | 99.1834 | 90.4624 | 6923 | 3630 | 6923 | 57 | 13 | 22.8070 | |
| jmaeng-gatk | SNP | ti | map_l100_m1_e0 | het | 92.5822 | 87.8732 | 97.8244 | 80.8303 | 26311 | 3631 | 26304 | 585 | 55 | 9.4017 | |
| astatham-gatk | SNP | tv | map_l100_m1_e0 | het | 86.5303 | 76.4416 | 99.6869 | 75.5609 | 11785 | 3632 | 11781 | 37 | 10 | 27.0270 | |
| mlin-fermikit | SNP | ti | map_l150_m0_e0 | het | 44.5289 | 28.7424 | 98.7862 | 66.7936 | 1465 | 3632 | 1465 | 18 | 3 | 16.6667 | |
| jmaeng-gatk | SNP | ti | map_l100_m2_e0 | het | 92.7126 | 88.1229 | 97.8066 | 81.8391 | 26985 | 3637 | 26978 | 605 | 56 | 9.2562 | |
| jmaeng-gatk | SNP | ti | map_l100_m2_e1 | het | 92.7795 | 88.2397 | 97.8118 | 81.8240 | 27319 | 3641 | 27312 | 611 | 56 | 9.1653 | |
| ckim-gatk | SNP | tv | map_l150_m2_e0 | * | 79.8775 | 67.9260 | 96.9327 | 89.4279 | 7713 | 3642 | 7711 | 244 | 8 | 3.2787 | |
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 56.5642 | 40.0198 | 96.4286 | 46.2791 | 2430 | 3642 | 2673 | 99 | 84 | 84.8485 | |
| jmaeng-gatk | SNP | tv | map_l150_m2_e1 | * | 80.0731 | 68.3012 | 96.7480 | 89.5225 | 7856 | 3646 | 7854 | 264 | 8 | 3.0303 | |
| gduggal-bwavard | SNP | tv | * | homalt | 99.4965 | 99.0327 | 99.9647 | 19.0358 | 373475 | 3648 | 371220 | 131 | 86 | 65.6489 | |
| mlin-fermikit | SNP | ti | map_l150_m1_e0 | homalt | 60.2226 | 50.2115 | 75.2198 | 56.9340 | 3679 | 3648 | 3679 | 1212 | 1145 | 94.4719 | |
| anovak-vg | INDEL | D1_5 | * | homalt | 93.1579 | 92.5438 | 93.7802 | 58.8390 | 45278 | 3648 | 45761 | 3035 | 2387 | 78.6491 | |
| gduggal-snapplat | INDEL | D6_15 | HG002complexvar | * | 44.3210 | 31.1015 | 77.0858 | 66.5750 | 1649 | 3653 | 1312 | 390 | 129 | 33.0769 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 90.4913 | 83.3097 | 99.0278 | 77.4266 | 18244 | 3655 | 18233 | 179 | 151 | 84.3575 | |
| ckim-isaac | INDEL | I1_5 | * | homalt | 96.6849 | 93.9498 | 99.5841 | 48.5995 | 56772 | 3656 | 56743 | 237 | 135 | 56.9620 | |
| egarrison-hhga | SNP | * | * | het | 99.8773 | 99.8048 | 99.9499 | 18.3927 | 1869930 | 3657 | 1869954 | 938 | 124 | 13.2196 | |
| gduggal-snapfb | SNP | * | * | het | 98.9809 | 99.8048 | 98.1706 | 24.8638 | 1869943 | 3658 | 1870819 | 34863 | 1567 | 4.4947 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 75.1664 | 60.6286 | 98.8753 | 39.2261 | 5633 | 3658 | 5187 | 59 | 47 | 79.6610 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 75.1664 | 60.6286 | 98.8753 | 39.2261 | 5633 | 3658 | 5187 | 59 | 47 | 79.6610 | |
| ckim-gatk | SNP | tv | map_l150_m2_e1 | * | 80.0038 | 68.1273 | 96.8955 | 89.4103 | 7836 | 3666 | 7834 | 251 | 9 | 3.5857 | |
| gduggal-snapplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 64.1957 | 56.1798 | 74.8799 | 61.8437 | 4700 | 3666 | 6078 | 2039 | 1497 | 73.4183 | |
| ndellapenna-hhga | INDEL | D1_5 | HG002compoundhet | hetalt | 77.8263 | 64.0760 | 99.0905 | 66.4524 | 6546 | 3670 | 6101 | 56 | 47 | 83.9286 | |
| jpowers-varprowl | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 78.6453 | 92.3929 | 68.4589 | 73.0930 | 44599 | 3672 | 44716 | 20602 | 20414 | 99.0875 | |
| gduggal-bwaplat | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 88.3800 | 79.7888 | 99.0444 | 59.7268 | 14508 | 3675 | 14511 | 140 | 39 | 27.8571 | |
| astatham-gatk | SNP | tv | map_l100_m2_e0 | het | 86.7029 | 76.7066 | 99.6951 | 76.6657 | 12102 | 3675 | 12098 | 37 | 10 | 27.0270 | |
| gduggal-bwaplat | SNP | tv | map_l125_m0_e0 | * | 61.5481 | 44.5483 | 99.5283 | 92.9610 | 2954 | 3677 | 2954 | 14 | 5 | 35.7143 | |
| ndellapenna-hhga | INDEL | D1_5 | * | hetalt | 77.7578 | 64.1093 | 98.7893 | 70.8854 | 6568 | 3677 | 6120 | 75 | 63 | 84.0000 | |
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 86.7685 | 79.7558 | 95.1333 | 68.7830 | 14502 | 3681 | 14524 | 743 | 84 | 11.3055 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 74.9981 | 60.3703 | 98.9815 | 39.2947 | 5609 | 3682 | 5248 | 54 | 46 | 85.1852 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 74.9981 | 60.3703 | 98.9815 | 39.2947 | 5609 | 3682 | 5248 | 54 | 46 | 85.1852 | |
| ndellapenna-hhga | SNP | ti | * | * | 99.8903 | 99.8233 | 99.9574 | 16.8793 | 2081825 | 3686 | 2081847 | 888 | 298 | 33.5586 | |
| ciseli-custom | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 3.6088 | 0.0000 | 0.0000 | 138 | 3686 | 0 | 0 | 0 | ||