PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
83301-83350 / 86044 show all
mlin-fermikitINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
77.6790
63.6186
99.7178
29.4964
4564261045931313
100.0000
gduggal-bwaplatINDELI1_5HG002complexvarhet
91.7425
85.6452
98.7744
60.7292
15578261115555193126
65.2850
gduggal-bwaplatINDELI6_15*het
84.1633
73.9659
97.6222
67.9845
74212612743118155
30.3867
astatham-gatkINDEL***
99.3424
99.2404
99.4446
59.9126
341925261734178819091550
81.1943
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
60.6700
53.9166
69.3576
54.0626
30632618323914311089
76.1006
anovak-vgSNPtvmap_l100_m1_e0*
83.4211
89.3066
78.2634
70.1430
2188126202184860681313
21.6381
ciseli-customSNPtimap_l125_m0_e0het
74.4671
68.2803
81.8868
84.0446
564226215642124840
3.2051
gduggal-bwaplatINDELD1_5lowcmp_SimpleRepeat_diTR_11to50het
84.2729
74.8150
96.4680
58.6163
77862621778428597
34.0351
qzeng-customINDEL*lowcmp_SimpleRepeat_diTR_11to50*
92.9935
92.8372
93.1502
44.3921
3397126215982243993170
72.0618
gduggal-bwavardINDELD16_PLUS**
63.4968
61.3502
65.7990
69.3353
41622622417121681906
87.9151
eyeh-varpipeINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
40.3639
25.5814
95.6173
48.0711
902262417898281
98.7805
eyeh-varpipeINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
40.3639
25.5814
95.6173
48.0711
902262417898281
98.7805
anovak-vgSNPtimap_l100_m2_e0homalt
92.0181
85.6628
99.3921
60.4480
156842625155329590
94.7368
qzeng-customSNPtiHG002complexvarhomalt
99.2303
98.6432
99.8245
18.6252
1908392625186005327247
75.5352
gduggal-bwaplatINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
72.7559
58.4625
96.3002
76.5890
36962626369614255
38.7324
gduggal-bwaplatINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
72.7559
58.4625
96.3002
76.5890
36962626369614255
38.7324
ghariani-varprowlINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
0.0000
0.3782
0.0000
0.0000
102634000
jpowers-varprowlINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
0.0000
0.2648
0.0000
0.0000
72637000
gduggal-bwavardINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
0.0000
0.2269
0.0000
0.0000
62638000
ghariani-varprowlINDEL*lowcmp_SimpleRepeat_quadTR_11to50hetalt
0.0000
1.6033
0.0000
0.0000
432639000
gduggal-snapfbINDELD1_5HG002compoundhet*
80.1461
78.4226
81.9472
64.9485
959526401045423031568
68.0851
anovak-vgSNPtimap_l100_m2_e1homalt
92.0569
85.7251
99.3985
60.4006
158542640157009590
94.7368
ciseli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
0.0000
2.9747
0.0000
0.0000
812642000
gduggal-snapvardINDELD1_5HG002complexvar*
89.5567
91.9115
87.3195
53.8184
3006726463483050583634
71.8466
jpowers-varprowlINDEL*lowcmp_SimpleRepeat_quadTR_11to50hetalt
0.0000
1.3050
0.0000
0.0000
352647000
ciseli-customINDELD1_5*homalt
89.1477
94.5898
84.2977
60.0900
4627926474606785817193
83.8247
anovak-vgSNPtvmap_l100_m2_e0*
83.6288
89.4260
78.5375
71.8835
2238626472235161081319
21.5946
ckim-isaacINDELI6_15HG002compoundhet*
78.6319
69.8154
89.9971
31.6672
612726496127681634
93.0984
eyeh-varpipeINDEL*HG002complexvarhet
95.5256
94.2569
96.8290
49.4429
4355826544204813771284
93.2462
raldana-dualsentieonSNP***
99.9260
99.9131
99.9389
18.4181
305196526543051826186797
5.1955
gduggal-bwavardSNP*map_sirenhet
96.2598
97.0810
95.4524
69.7950
883352656872334156368
8.8547
ghariani-varprowlSNP**het
99.0974
99.8581
98.3482
28.2380
18709072659187129431430431
1.3713
ciseli-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
17.6716
10.8017
48.5470
60.1499
3222659284301281
93.3555
qzeng-customSNPtv*homalt
99.5964
99.2947
99.8999
20.4155
3744632660372209373242
64.8794
ndellapenna-hhgaSNP*HG002complexvar*
99.7910
99.6474
99.9350
18.9550
7517212660751769489351
71.7791
anovak-vgSNPtvmap_l100_m2_e1*
83.6965
89.4751
78.6189
71.8943
2262226612257761401324
21.5635
gduggal-snapvardINDELI16_PLUS*het
3.9257
2.0603
41.4818
51.0283
56266210471477850
57.5491
gduggal-snapplatINDEL*HG002compoundhethet
24.1644
34.9047
18.4785
71.1703
14292665172776192083
27.3395
jlack-gatkINDEL*HG002compoundhethetalt
94.2807
89.4162
99.7049
50.9823
225152665226376762
92.5373
gduggal-bwavardINDEL*lowcmp_SimpleRepeat_quadTR_11to50hetalt
0.0000
0.4847
0.0000
0.0000
132669000
jlack-gatkINDEL**hetalt
94.2358
89.4005
99.6240
58.0561
225622675227868678
90.6977
ckim-vqsrSNPtimap_l250_m1_e0*
58.4497
41.5811
98.3471
96.9616
190426751904320
0.0000
ltrigg-rtg2SNP**het
99.8157
99.8572
99.7742
16.9842
1870922267618711584235135
3.1877
qzeng-customINDELI6_15HG002compoundhethetalt
81.2263
68.6424
99.4598
26.8379
5860267736822014
70.0000
qzeng-customINDELI6_15*hetalt
81.2294
68.6820
99.3860
39.2080
5873267837232317
73.9130
ltrigg-rtg1SNP**het
99.8185
99.8570
99.7799
17.5567
1870919267918711674127102
2.4715
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
53.6407
81.6652
39.9361
49.3327
119372680120081806017978
99.5460
gduggal-bwaplatINDELD1_5HG002compoundhethetalt
84.6945
73.7471
99.4587
70.0372
7534268275334139
95.1220
jpowers-varprowlINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
39.0386
32.6054
48.6345
60.4703
12992685130013731338
97.4508
gduggal-snapplatINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
37.3916
32.4297
44.1462
77.4584
1292269217762247890
39.6084