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Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
83151-83200 / 86044 show all
gduggal-snapplatSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
91.5045
85.7025
98.1490
78.6703
14548242714582275104
37.8182
gduggal-snapplatSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
91.5045
85.7025
98.1490
78.6703
14548242714582275104
37.8182
jpowers-varprowlINDELD6_15*homalt
74.3238
61.6345
93.5925
52.0152
389924273900267242
90.6367
ckim-vqsrSNP*map_l250_m2_e1het
69.4427
53.8564
97.7249
97.1454
283524292835660
0.0000
qzeng-customSNPtvmap_sirenhomalt
92.1926
85.9107
99.4656
52.8075
148112429147057975
94.9367
ciseli-customINDELD1_5HG002complexvarhet
87.0231
88.2917
85.7906
58.0288
183322431183183034650
21.4239
jmaeng-gatkSNP*HG002complexvarhet
99.7155
99.4778
99.9544
19.1665
463066243146293821165
30.8057
mlin-fermikitSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
95.2752
94.6742
95.8839
71.5291
4326824344328218581107
59.5802
mlin-fermikitSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
95.2752
94.6742
95.8839
71.5291
4326824344328218581107
59.5802
gduggal-bwavardINDEL*HG002complexvarhomalt
95.0919
90.9942
99.5761
40.5691
2459324342395810266
64.7059
qzeng-customSNPtvmap_l125_m2_e1het
85.6436
76.9070
96.6195
86.8249
811624378117284231
81.3380
ghariani-varprowlINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
44.2793
38.8052
51.5516
63.0411
15462438154514521385
95.3857
anovak-vgSNP*map_l100_m0_e0homalt
87.9850
78.9931
99.2870
62.5031
9179244190526558
89.2308
anovak-vgINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
0.0000
21.6987
0.0000
0.0000
6772443000
gduggal-bwavardINDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
79.6677
66.2895
99.8110
27.4375
48042443475499
100.0000
gduggal-snapvardINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
0.0000
58.8176
0.0000
0.0000
34922445000
anovak-vgSNP*map_l150_m2_e0homalt
88.0238
79.0922
99.2294
72.9596
9253244691437159
83.0986
raldana-dualsentieonSNP**het
99.8865
99.8694
99.9036
19.2179
187114124461871016180643
2.3810
gduggal-bwaplatINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
72.9905
59.8984
93.4066
85.0088
36552447365525842
16.2791
astatham-gatkSNPtvmap_l125_m1_e0het
86.0971
75.8345
99.5720
79.9490
767924477677338
24.2424
gduggal-snapfbSNPti*het
99.2278
99.8088
98.6535
22.6951
12794462451127998017470996
5.7012
rpoplin-dv42INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
96.7786
96.2480
97.3151
87.4466
6289924526281417331611
92.9602
rpoplin-dv42INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
96.7786
96.2480
97.3151
87.4466
6289924526281417331611
92.9602
qzeng-customINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
90.9981
84.0955
99.1351
58.5016
12965245245854031
77.5000
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
83.9007
77.8470
90.9754
41.3740
862724559355928916
98.7069
raldana-dualsentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.3740
96.2418
98.5331
64.4408
62895245662671933862
92.3901
raldana-dualsentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.3740
96.2418
98.5331
64.4408
62895245662671933862
92.3901
jpowers-varprowlINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
42.7044
39.5869
46.3548
67.9809
16102457161518691855
99.2509
ltrigg-rtg1INDEL*HG002compoundhet*
95.1229
91.7957
98.7003
59.4533
27502245827566363303
83.4711
jpowers-varprowlINDELD1_5HG002complexvar*
93.8573
92.4805
95.2757
55.2360
3025524603013014941377
92.1687
gduggal-snapvardINDELI1_5*het
89.2130
96.8839
82.6678
61.9450
765782463822231723913345
77.4117
anovak-vgSNP*map_l150_m2_e1homalt
88.0784
79.1748
99.2382
72.9549
9364246392497159
83.0986
gduggal-bwaplatINDEL*lowcmp_SimpleRepeat_diTR_11to50homalt
85.5433
76.2190
97.4669
52.9093
789424637888205168
81.9512
ciseli-customINDELI16_PLUS*het
16.1440
9.3451
59.2506
84.8956
2542464253174123
70.6897
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
89.9895
86.0506
94.3064
43.1744
15206246515106912765
83.8816
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
89.9895
86.0506
94.3064
43.1744
15206246515106912765
83.8816
anovak-vgSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
87.8643
91.4147
84.5794
78.5110
2624724652690349051242
25.3211
anovak-vgSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
87.8643
91.4147
84.5794
78.5110
2624724652690349051242
25.3211
gduggal-bwaplatINDELD6_15lowcmp_SimpleRepeat_diTR_11to50*
83.6519
73.9268
96.3233
56.4236
699224666995267204
76.4045
gduggal-bwaplatSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
92.0320
86.1800
98.7365
71.8190
1538424671539519756
28.4264
astatham-gatkSNP*map_l125_m0_e0*
93.0056
87.2530
99.5702
78.3613
169142471169117329
39.7260
ciseli-customSNPtvmap_l150_m1_e0het
70.7269
64.3680
78.4799
84.0134
447124754471122646
3.7520
gduggal-bwaplatSNP*HG002compoundhet*
88.4972
90.4035
86.6696
48.3543
233442478234453606414
11.4809
jmaeng-gatkSNPtv*het
99.5410
99.5807
99.5013
31.3482
5892152481589142295352
1.7609
ckim-isaacINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
81.4636
75.3003
88.7258
57.0269
758524887374937772
82.3906
ckim-isaacSNPtimap_l250_m2_e0*
66.8081
50.2995
99.4473
90.8038
251924892519143
21.4286
gduggal-snapvardINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
0.0000
29.3333
0.0000
0.0000
10342491000
gduggal-snapvardINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
29.3333
0.0000
0.0000
10342491000
qzeng-customSNPtimap_l150_m1_e0homalt
79.2986
65.9888
99.3340
70.0903
4835249247733232
100.0000
jpowers-varprowlINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
24.6578
16.3033
50.5747
64.7773
4862495484473460
97.2516