PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
83051-83100 / 86044 show all
cchapple-customSNP**het
99.7822
99.8765
99.6880
23.4490
1871274231318719215859675
11.5207
ciseli-customSNP*map_l125_m2_e0homalt
88.1697
86.6763
89.7155
68.5746
1506023151501317211379
80.1278
ckim-gatkSNPtv*het
99.5973
99.6088
99.5858
30.9441
5893812315589308245161
2.4888
ckim-gatkSNPtvmap_l125_m2_e0homalt
76.1523
61.5091
99.9460
77.4235
37012316370120
0.0000
gduggal-bwaplatINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
83.0248
72.2847
97.5133
68.6969
604323176039154132
85.7143
gduggal-bwaplatINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
83.0248
72.2847
97.5133
68.6969
604323176039154132
85.7143
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
77.4166
67.7028
90.3846
37.1872
485723176587069
98.5714
ndellapenna-hhgaINDEL**het
97.8590
98.8060
96.9301
56.3967
191815231819332861235425
88.6004
gduggal-bwafbINDELI6_15HG002compoundhethetalt
82.7582
72.8242
95.8306
40.7336
6217232014716463
98.4375
ckim-isaacINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
90.4880
83.4521
98.8195
30.8039
11710232212138145128
88.2759
ckim-isaacINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
91.1346
84.9322
98.3142
43.5277
13094232313472231203
87.8788
gduggal-bwafbINDELI6_15*hetalt
81.7221
72.8336
93.0818
54.0993
622823231480110109
99.0909
gduggal-snapplatINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
56.5351
42.3182
85.1372
53.5880
170523241707298259
86.9128
jmaeng-gatkSNPtvmap_l125_m2_e1homalt
76.3359
61.7386
99.9733
76.6438
37502324375011
100.0000
gduggal-bwafbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
89.5071
83.4165
96.5571
49.6329
1170523273113111109
98.1982
anovak-vgSNP*map_l100_m0_e0het
78.3081
89.0262
69.8934
77.2580
1887823271869380522114
26.2543
ckim-gatkSNPtvmap_l125_m2_e1homalt
76.2777
61.6727
99.9466
77.3753
37462328374620
0.0000
gduggal-snapplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
24.7522
14.3959
88.2086
64.5213
39223313895241
78.8462
ckim-isaacSNPtvmap_l150_m2_e0homalt
59.9931
42.8606
99.9429
72.5764
17502333175011
100.0000
jlack-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
96.8694
96.4285
97.3143
66.9705
6301723346279517331467
84.6509
jlack-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
96.8694
96.4285
97.3143
66.9705
6301723346279517331467
84.6509
ciseli-customSNP*map_l125_m2_e1homalt
88.1920
86.6872
89.7500
68.5967
1519823341514817301386
80.1156
mlin-fermikitSNPtimap_l250_m2_e1het
44.9323
29.1604
97.8637
82.7453
9622337962211
4.7619
gduggal-snapfbINDELD16_PLUSHG002compoundhet*
0.1707
0.0854
100.0000
0.0000
22339100
ciseli-customINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50*
78.1562
80.3015
76.1225
51.8771
95352339949429781387
46.5749
asubramanian-gatkSNPtimap_l150_m0_e0homalt
26.4068
15.2119
100.0000
94.8680
420234142000
gduggal-snapplatINDELD16_PLUSHG002compoundhet*
0.0000
0.0000
0.0000
02341000
gduggal-bwavardSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
92.1518
91.8431
92.4625
82.8802
263702342260552124340
16.0075
gduggal-bwavardSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
92.1518
91.8431
92.4625
82.8802
263702342260552124340
16.0075
jmaeng-gatkSNPtvHG002complexvar*
99.5035
99.0473
99.9639
22.5835
24380723452437158831
35.2273
jpowers-varprowlINDELD1_5*het
92.8158
97.3223
88.7081
61.6875
852292345852211084810534
97.1055
gduggal-snapvardINDEL*lowcmp_SimpleRepeat_diTR_11to50het
73.0691
85.1079
64.0141
42.9883
134132347356932006518085
90.1321
ckim-isaacSNPtvmap_l150_m2_e1homalt
60.1387
43.0092
99.9438
72.5081
17782356177811
100.0000
ckim-vqsrSNPtvmap_l100_m0_e0het
79.8556
67.3775
98.0060
89.3473
486623564866991
1.0101
egarrison-hhgaINDEL*HG002complexvar*
97.4540
96.9352
97.9784
67.1267
7458023587454115381113
72.3667
gduggal-snapplatSNP*map_l125_m0_e0*
91.0834
87.8360
94.5802
84.8287
17027235817032976546
55.9426
astatham-gatkSNP*map_l125_m0_e0het
89.5045
81.3803
99.4306
82.1625
103062358103035918
30.5085
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
0.0000
13.4043
0.0000
0.0000
3652358000
jpowers-varprowlINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
0.2959
0.0000
0.0000
72359000
ghariani-varprowlINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
0.2959
0.0000
0.0000
72359000
asubramanian-gatkSNPtimap_l250_m1_e0het
33.8831
20.4178
99.5074
98.4836
606236260631
33.3333
hfeng-pmm1SNP***
99.9496
99.9227
99.9766
18.0950
305225723623052118715107
14.9650
gduggal-bwaplatSNPtvmap_l150_m1_e0homalt
57.2617
40.1166
100.0000
85.3494
15832363158300
ckim-vqsrSNPtvmap_l150_m0_e0*
60.1129
43.3637
97.9437
94.7907
181023641810380
0.0000
cchapple-customSNPti**
99.8773
99.8866
99.8679
19.3368
2083147236420819362754477
17.3203
anovak-vgINDELI1_5*homalt
66.3251
96.0879
50.6397
46.1343
580642364592915779355650
96.2919
ckim-isaacSNP*map_l250_m1_e0het
66.7411
50.2629
99.2937
91.8401
239023652390171
5.8824
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
51.7959
37.2013
85.2349
63.2016
140123651397242216
89.2562
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
51.7959
37.2013
85.2349
63.2016
140123651397242216
89.2562
gduggal-snapvardSNPtimap_sirenhet
95.3627
96.2088
94.5314
68.3335
600172365594993442355
10.3138