PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
83001-83050 / 86044 show all
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
78.0254
68.0540
91.4205
35.5394
484022726506160
98.3607
ckim-isaacSNPtvmap_l150_m1_e0homalt
59.4623
42.3213
99.9402
68.6492
16702276167011
100.0000
ciseli-customINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
3.8039
0.0000
0.0000
902276000
gduggal-bwaplatINDEL*lowcmp_SimpleRepeat_homopolymer_6to10het
92.4605
86.1404
99.7814
63.1476
141522277141523121
67.7419
gduggal-bwaplatSNPtvmap_l125_m0_e0het
64.9641
48.2618
99.3452
94.0434
212422772124145
35.7143
hfeng-pmm3INDEL*HG002compoundhet*
94.8142
92.3999
97.3580
58.7757
27683227727564748724
96.7914
hfeng-pmm2SNP***
99.9416
99.9254
99.9579
18.8175
3052339228030522021287114
8.8578
gduggal-snapplatSNPtimap_l125_m1_e0*
94.1774
92.2277
96.2113
79.7747
270552280270701066586
54.9719
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
58.8295
52.0303
67.6729
41.0135
2473228026231253974
77.7334
gduggal-snapplatINDELD6_15HG002complexvarhet
38.9411
26.8910
70.5590
64.8625
839228156823724
10.1266
gduggal-snapplatSNP*map_l100_m2_e0het
95.2448
95.0839
95.4062
81.1675
4411822814415421261062
49.9530
gduggal-snapvardINDELD1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
0.0000
66.8748
0.0000
0.0000
46052281000
gduggal-snapfbINDELI1_5*het
94.5346
97.1091
92.0931
57.7460
7675622858232270681603
22.6797
gduggal-snapplatSNP*map_l100_m2_e1het
95.2787
95.1235
95.4344
81.1824
4461122874464921361068
50.0000
gduggal-snapvardSNP*HG002compoundhethet
77.1322
83.8682
71.3978
57.2411
1189022871327053162307
43.3973
eyeh-varpipeINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
45.8081
34.5074
68.1144
30.9514
12052287454821292118
99.4833
jmaeng-gatkINDEL*HG002compoundhet*
93.6190
92.3632
94.9094
62.9257
2767222882755614781464
99.0528
jpowers-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
20.0419
16.9448
24.5243
50.5230
467228946414281427
99.9300
ckim-isaacSNPtimap_l125_m0_e0homalt
65.7804
49.0314
99.9093
59.9855
22022289220222
100.0000
mlin-fermikitINDEL**homalt
97.5803
98.1713
96.9963
56.8203
122883228912277438023715
97.7117
ciseli-customSNP*map_l125_m1_e0homalt
88.0175
86.4537
89.6388
65.9316
1461522901456916841350
80.1663
gduggal-bwafbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
94.7146
92.7089
96.8091
59.8061
29118229029975988774
78.3401
gduggal-bwafbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
94.7146
92.7089
96.8091
59.8061
29118229029975988774
78.3401
gduggal-bwaplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
85.3804
75.9374
97.5054
58.4142
723022917231185160
86.4865
gduggal-bwavardINDELD1_5HG002complexvar*
93.5349
92.9971
94.0789
54.5678
3042422912888618181258
69.1969
gduggal-snapvardINDEL*HG002complexvarhetalt
0.0000
38.0476
0.0000
0.0000
14072291000
asubramanian-gatkSNPtvmap_l150_m0_e0het
32.4897
19.4161
99.4595
97.4792
552229155231
33.3333
ckim-gatkSNPtvHG002complexvar*
99.5164
99.0689
99.9680
22.5419
24386022922437687828
35.8974
gduggal-snapplatSNPtimap_l125_m2_e0*
94.3195
92.4218
96.2968
81.1125
279652293279801076588
54.6468
gduggal-snapplatSNP*lowcmp_SimpleRepeat_diTR_11to50*
79.9070
76.3413
83.8220
85.1082
7399229374611440187
12.9861
ckim-isaacSNPtimap_l250_m1_e0*
66.4534
49.9017
99.4343
90.2759
228522942285132
15.3846
gduggal-bwaplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
82.6140
71.5225
97.7770
46.1187
576422955762131129
98.4733
gduggal-bwaplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
82.6140
71.5225
97.7770
46.1187
576422955762131129
98.4733
gduggal-bwaplatINDELD6_15HG002compoundhethetalt
83.4699
71.8317
99.6086
36.1235
5855229658532322
95.6522
jmaeng-gatkSNPtvmap_l125_m1_e0homalt
75.6286
60.8191
99.9719
74.7843
35642296356411
100.0000
gduggal-snapplatINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
53.2289
38.9258
84.1491
87.7362
14642297151328571
24.9123
gduggal-snapplatINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
53.2289
38.9258
84.1491
87.7362
14642297151328571
24.9123
gduggal-snapplatSNPtimap_l125_m2_e1*
94.3667
92.4859
96.3257
81.1411
282722297282871079590
54.6803
gduggal-snapvardINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
43.0132
41.0316
45.1960
37.9193
15992298222526982406
89.1772
gduggal-snapvardINDELD16_PLUSHG002compoundhet*
3.4436
1.7941
42.7184
52.9680
422299445935
59.3220
mlin-fermikitINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
93.6687
95.2332
92.1549
68.7890
4597023014578938983775
96.8445
ckim-gatkSNPtvmap_l125_m1_e0homalt
75.5546
60.7338
99.9438
75.6613
35592301355920
0.0000
gduggal-bwaplatINDELD6_15*hetalt
82.8017
71.8008
97.7833
50.4460
586923055867133131
98.4962
gduggal-snapvardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
0.0000
66.2224
0.0000
0.0000
45212306000
ciseli-customSNPtvmap_l100_m0_e0het
74.3908
68.0559
82.0260
79.9973
491523074915107742
3.8997
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
59.5875
61.0924
58.1549
41.9454
36242308562340463831
94.6861
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
51.7017
43.2260
64.3120
56.8434
175823091748970697
71.8557
jmaeng-gatkSNPtvmap_l125_m2_e0homalt
76.2110
61.5755
99.9730
76.6962
37052312370511
100.0000
mlin-fermikitSNP*map_l150_m0_e0homalt
52.6207
43.4581
66.6792
59.8524
177723121777888815
91.7793
mlin-fermikitSNPtimap_l250_m2_e0het
44.6395
28.9183
97.8170
82.5282
9412313941211
4.7619