PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
82651-82700 / 86044 show all
ciseli-customINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_merged*
51.3330
45.2682
59.2743
64.1063
16121949160111001012
92.0000
anovak-vgINDELI16_PLUS*hetalt
0.0000
7.1020
0.0000
0.0000
1491949000
qzeng-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
88.1261
88.9650
87.3028
53.9810
1572119501704524791231
49.6571
qzeng-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
88.1261
88.9650
87.3028
53.9810
1572119501704524791231
49.6571
ckim-isaacINDELI1_5*hetalt
89.8867
82.5636
98.6351
45.1097
924319529178127112
88.1890
gduggal-snapfbSNP*map_siren*
98.4685
98.6644
98.2733
60.5270
14427519531442782535801
31.5976
gduggal-snapplatINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10het
92.4957
86.7773
99.0210
60.7081
1281719531284612718
14.1732
gduggal-bwafbINDELI6_15*het
88.0827
80.5342
97.1926
38.4775
8080195313848400379
94.7500
eyeh-varpipeINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
37.1380
22.9618
97.0630
40.4691
583195613554141
100.0000
qzeng-customSNPtimap_l150_m0_e0het
73.7997
61.6049
92.0141
94.1071
314019573134272231
84.9265
ciseli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
33.8948
28.9913
40.7948
49.7853
799195781111771070
90.9091
anovak-vgINDELI1_5lowcmp_SimpleRepeat_quadTR_11to50*
54.2561
49.7820
59.6139
54.7156
19411958305720711674
80.8305
ckim-isaacSNPtvHG002compoundhet*
85.3990
78.0567
94.2659
45.8825
696519587217439382
87.0159
ckim-isaacSNPtvmap_l125_m0_e0het
71.3076
55.5101
99.6736
79.7505
24431958244381
12.5000
gduggal-snapplatINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
47.2065
34.2838
75.7645
57.3941
1022195999131753
16.7192
ckim-isaacINDELD1_5*homalt
97.8426
95.9899
99.7683
50.1114
4696419624693310936
33.0275
mlin-fermikitSNPtvmap_l250_m2_e0*
45.2311
31.9223
77.5717
80.1107
9201962920266237
89.0977
jpowers-varprowlSNP*HG002compoundhet*
90.5976
92.3941
88.8696
48.7204
2385819642405730132048
67.9721
ltrigg-rtg1SNP*HG002complexvar*
99.8490
99.7395
99.9587
18.9301
7524191965752595311136
43.7299
qzeng-customSNPtvmap_l100_m1_e0homalt
87.4842
78.2705
99.1566
59.7237
7078196570546060
100.0000
ckim-dragenINDEL*HG002compoundhet*
93.6532
93.4379
93.8696
62.4863
2799419662786818201806
99.2308
jpowers-varprowlINDELI6_15*homalt
79.1239
68.4565
93.7294
42.5350
427119684275286264
92.3077
ghariani-varprowlINDELD16_PLUSHG002compoundhet*
18.0085
15.8906
20.7778
37.7809
372196937414261417
99.3689
gduggal-snapplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
38.2939
34.3333
43.2873
81.8899
103019701222160126
1.6240
qzeng-customSNPtvmap_l100_m2_e0homalt
87.6918
78.6086
99.1482
62.9624
7243197172176261
98.3871
jpowers-varprowlSNP*map_sirenhet
98.0429
97.8328
98.2539
63.2948
890191972890211582312
19.7219
jmaeng-gatkSNPtvmap_l125_m1_e0het
87.4372
80.5254
95.6471
87.5400
81541972815237112
3.2345
jpowers-varprowlINDEL*lowcmp_SimpleRepeat_triTR_11to50*
73.0180
70.7114
75.4801
45.1896
47611972475615451527
98.8350
ciseli-customINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
83.2820
90.9950
76.7743
72.8145
1992719721980759925413
90.3371
gduggal-bwaplatSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331het
86.7364
78.3970
97.0612
92.7953
71601973716721734
15.6682
gduggal-bwaplatSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
86.7364
78.3970
97.0612
92.7953
71601973716721734
15.6682
gduggal-bwaplatINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
64.8666
51.1386
88.6695
86.4061
20661974206626462
23.4848
ghariani-varprowlINDELI6_15*homalt
79.0493
68.3603
93.7006
43.2628
426519744269287252
87.8049
gduggal-snapfbINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
83.6015
87.3211
80.1860
72.6837
136021975122463026728
24.0582
eyeh-varpipeINDELI6_15*het
83.0781
80.3150
86.0381
40.9246
80581975804813061290
98.7749
ckim-vqsrSNP*map_l250_m1_e0homalt
33.0735
19.8132
100.0000
96.8810
488197548800
mlin-fermikitSNPtvmap_l250_m2_e1*
45.6242
32.2702
77.8329
80.3319
9411975941268239
89.1791
ciseli-customSNPtvmap_l125_m0_e0*
75.4859
70.1855
81.6523
81.6008
4654197746551046265
25.3346
jmaeng-gatkSNPtvmap_l125_m2_e0het
87.7835
81.0668
95.7136
88.2752
84651977846337912
3.1662
gduggal-snapvardINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
62.3368
46.0175
96.5915
42.2906
1687197917576255
88.7097
jmaeng-gatkSNPtvmap_l125_m2_e1het
87.8827
81.2376
95.7119
88.2796
85731980857138413
3.3854
qzeng-customSNPtvmap_l100_m2_e1homalt
87.7555
78.7143
99.1432
62.9833
7322198072906362
98.4127
qzeng-customINDEL*HG002complexvar*
97.6731
97.4200
97.9274
54.9567
749531985772531635731
44.7095
ciseli-customSNPtiHG002compoundhethet
71.3901
79.1057
65.0459
46.7631
7519198675854076149
3.6555
gduggal-bwavardINDELD16_PLUSHG002compoundhet*
17.4062
15.1645
20.4258
36.2202
355198635513831372
99.2046
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
55.8462
84.1067
41.8008
48.8238
105311990105941475014683
99.5458
anovak-vgINDEL*map_siren*
72.9885
73.1309
72.8467
79.6324
54191991548920461378
67.3509
anovak-vgINDELI16_PLUSHG002compoundhet*
11.6860
7.0929
33.1593
41.3476
1521991127256126
49.2188
ckim-gatkSNPtvmap_l125_m1_e0het
87.4351
80.3377
95.9080
87.2955
81351991813334714
4.0346
mlin-fermikitINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
79.2227
71.1825
89.3103
43.3419
491819914921589580
98.4720