PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
82601-82650 / 86044 show all | |||||||||||||||
| eyeh-varpipe | INDEL | I16_PLUS | HG002compoundhet | * | 16.3932 | 10.4060 | 38.6054 | 37.9092 | 223 | 1920 | 227 | 361 | 360 | 99.7230 | |
| anovak-vg | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 72.6300 | 71.4689 | 73.8294 | 38.5577 | 4812 | 1921 | 5913 | 2096 | 1645 | 78.4828 | |
| anovak-vg | SNP | ti | map_l125_m2_e1 | het | 77.5988 | 89.9303 | 68.2413 | 78.1425 | 17165 | 1922 | 17046 | 7933 | 1721 | 21.6942 | |
| gduggal-bwavard | INDEL | D16_PLUS | HG002compoundhet | hetalt | 0.0000 | 0.3112 | 0.0000 | 0.0000 | 6 | 1922 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D16_PLUS | HG002compoundhet | hetalt | 0.0000 | 0.2593 | 0.0000 | 0.0000 | 5 | 1923 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D16_PLUS | HG002compoundhet | hetalt | 0.0000 | 0.2593 | 0.0000 | 0.0000 | 5 | 1923 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.3107 | 0.0000 | 0.0000 | 6 | 1925 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 0.3107 | 0.0000 | 0.0000 | 6 | 1925 | 0 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | map_l250_m2_e1 | * | 50.6394 | 33.9506 | 99.5976 | 97.7410 | 990 | 1926 | 990 | 4 | 1 | 25.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.2589 | 0.0000 | 0.0000 | 5 | 1926 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 0.2589 | 0.0000 | 0.0000 | 5 | 1926 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 52.6781 | 47.7624 | 58.7217 | 52.4909 | 1761 | 1926 | 1764 | 1240 | 1227 | 98.9516 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.2589 | 0.0000 | 0.0000 | 5 | 1926 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 0.2589 | 0.0000 | 0.0000 | 5 | 1926 | 0 | 0 | 0 | ||
| gduggal-snapplat | SNP | ti | map_l100_m0_e0 | * | 93.4813 | 91.1488 | 95.9364 | 78.9527 | 19844 | 1927 | 19855 | 841 | 482 | 57.3127 | |
| gduggal-snapfb | INDEL | D16_PLUS | HG002compoundhet | hetalt | 0.0000 | 0.0519 | 0.0000 | 0.0000 | 1 | 1927 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D16_PLUS | * | hetalt | 0.0000 | 0.3104 | 0.0000 | 0.0000 | 6 | 1927 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 56.0471 | 39.0837 | 99.0276 | 46.9019 | 1237 | 1928 | 1222 | 12 | 11 | 91.6667 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 83.6479 | 73.1252 | 97.7082 | 43.0315 | 5246 | 1928 | 5244 | 123 | 121 | 98.3740 | |
| gduggal-snapplat | INDEL | D16_PLUS | HG002compoundhet | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1928 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | D16_PLUS | * | hetalt | 0.0000 | 0.2587 | 0.0000 | 0.0000 | 5 | 1928 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D16_PLUS | * | hetalt | 0.0000 | 0.2587 | 0.0000 | 0.0000 | 5 | 1928 | 0 | 0 | 0 | ||
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 93.4046 | 90.2930 | 96.7382 | 47.0617 | 17934 | 1928 | 17795 | 600 | 351 | 58.5000 | |
| mlin-fermikit | SNP | tv | map_l150_m2_e1 | homalt | 60.4772 | 53.3382 | 69.8227 | 60.3864 | 2205 | 1929 | 2205 | 953 | 885 | 92.8646 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 76.6225 | 63.6808 | 96.1659 | 75.3638 | 3384 | 1930 | 3386 | 135 | 45 | 33.3333 | |
| gduggal-snapfb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.0518 | 0.0000 | 0.0000 | 1 | 1930 | 0 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 0.0518 | 0.0000 | 0.0000 | 1 | 1930 | 0 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1931 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1931 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 63.8520 | 52.6367 | 81.1407 | 57.2311 | 2146 | 1931 | 3201 | 744 | 345 | 46.3710 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 59.5348 | 0.0000 | 0.0000 | 2841 | 1931 | 0 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D16_PLUS | * | hetalt | 0.0000 | 0.0517 | 0.0000 | 0.0000 | 1 | 1932 | 0 | 0 | 0 | ||
| anovak-vg | SNP | tv | map_siren | homalt | 93.6911 | 88.7935 | 99.1605 | 53.2549 | 15308 | 1932 | 15238 | 129 | 93 | 72.0930 | |
| gduggal-bwavard | SNP | tv | HG002compoundhet | * | 81.1305 | 78.3481 | 84.1178 | 52.1015 | 6991 | 1932 | 7113 | 1343 | 1177 | 87.6396 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 91.7223 | 87.9766 | 95.8011 | 68.6010 | 14144 | 1933 | 12617 | 553 | 435 | 78.6618 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 91.7223 | 87.9766 | 95.8011 | 68.6010 | 14144 | 1933 | 12617 | 553 | 435 | 78.6618 | |
| gduggal-snapfb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 0.0000 | 0 | 1933 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | D16_PLUS | * | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1933 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 0.0000 | 0 | 1933 | 0 | 0 | 0 | |||
| anovak-vg | SNP | * | map_l150_m1_e0 | het | 75.5953 | 89.9876 | 65.1719 | 80.5681 | 17382 | 1934 | 17193 | 9188 | 2064 | 22.4641 | |
| rpoplin-dv42 | INDEL | * | HG002compoundhet | hetalt | 95.8717 | 92.3153 | 99.7130 | 50.6553 | 23245 | 1935 | 23276 | 67 | 66 | 98.5075 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 64.7166 | 48.4446 | 97.4485 | 63.6006 | 1822 | 1939 | 1986 | 52 | 43 | 82.6923 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 64.7166 | 48.4446 | 97.4485 | 63.6006 | 1822 | 1939 | 1986 | 52 | 43 | 82.6923 | |
| bgallagher-sentieon | INDEL | * | HG002compoundhet | * | 93.7345 | 93.5147 | 93.9554 | 62.6967 | 28017 | 1943 | 27901 | 1795 | 1783 | 99.3315 | |
| rpoplin-dv42 | INDEL | * | * | hetalt | 95.6899 | 92.3010 | 99.3372 | 57.2847 | 23294 | 1943 | 23381 | 156 | 151 | 96.7949 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 78.6020 | 69.2502 | 90.8738 | 58.9733 | 4378 | 1944 | 3515 | 353 | 342 | 96.8839 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 78.6020 | 69.2502 | 90.8738 | 58.9733 | 4378 | 1944 | 3515 | 353 | 342 | 96.8839 | |
| anovak-vg | INDEL | I16_PLUS | HG002compoundhet | hetalt | 0.0000 | 7.1190 | 0.0000 | 0.0000 | 149 | 1944 | 0 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | HG002compoundhet | hetalt | 90.1858 | 82.6071 | 99.2955 | 37.7647 | 9233 | 1944 | 9162 | 65 | 55 | 84.6154 | |
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 63.4268 | 61.9457 | 64.9805 | 71.6420 | 3171 | 1948 | 4342 | 2340 | 1455 | 62.1795 | |