PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
82451-82500 / 86044 show all
gduggal-snapplatINDELI6_15HG002complexvarhet
33.8586
23.3121
61.8312
60.5350
549180652032110
3.1153
cchapple-customINDEL*HG002compoundhet*
95.5576
93.9686
97.2012
57.1714
2815318075119114741382
93.7585
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
64.5845
75.5146
56.4183
33.5145
55761808842165055048
77.6018
eyeh-varpipeINDELD16_PLUSHG002compoundhet*
28.2801
22.7680
37.3134
28.0307
5331808525882881
99.8866
ciseli-customSNP*map_l150_m2_e1homalt
86.5594
84.7045
88.4973
73.1841
100181809999412991047
80.6005
jpowers-varprowlINDELI6_15*het
67.8850
81.9496
57.9408
49.0356
82221811826760015983
99.7000
mlin-fermikitINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
76.3374
62.0495
99.1738
31.6467
2961181130012525
100.0000
gduggal-snapvardINDELI1_5HG002complexvarhomalt
92.5606
86.5333
99.4905
33.4524
116371811109355651
91.0714
jmaeng-gatkSNPtvmap_l150_m2_e1homalt
71.9219
56.1684
99.9570
81.5898
23221812232211
100.0000
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
91.0480
87.7443
94.6101
39.6686
12973181212884734647
88.1471
gduggal-snapvardINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
23.3728
0.0000
0.0000
5531813000
gduggal-snapvardINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50*
55.4366
50.8272
60.9654
44.0200
1874181320461310988
75.4198
ckim-isaacINDEL*map_siren*
85.3582
75.5331
98.1215
78.4772
55971813558910746
42.9907
jlack-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
95.7595
95.2166
96.3087
53.9807
3608918133590113761269
92.2238
ckim-gatkSNPtvmap_l150_m2_e1homalt
71.8426
56.0716
99.9569
82.3233
23181816231810
0.0000
ghariani-varprowlINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
0.2744
0.0000
0.0000
51817000
jmaeng-gatkSNPtvmap_l150_m2_e0het
83.9830
74.9448
95.5001
91.0642
5435181754332566
2.3438
jpowers-varprowlINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
0.2744
0.0000
0.0000
51817000
gduggal-snapvardINDELI1_5lowcmp_SimpleRepeat_diTR_11to50*
68.0107
68.2833
67.7403
40.7190
391418181093652084870
93.5100
gduggal-snapfbINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331het
0.1099
0.0550
100.0000
0.0000
11818100
gduggal-snapfbINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
0.1099
0.0550
100.0000
0.0000
11818100
ciseli-customINDELD6_15*het
77.1133
84.3154
71.0447
55.4839
977318181015341381402
33.8811
gduggal-bwavardINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
0.2195
0.0000
0.0000
41818000
gduggal-snapplatINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331het
0.0000
0.0000
0.0000
01819000
gduggal-snapplatINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
0.0000
0.0000
0.0000
01819000
gduggal-bwaplatINDEL*HG002compoundhethet
66.0619
55.5447
81.4921
84.3450
227418202272516182
35.2713
jmaeng-gatkSNPtvmap_l150_m0_e0*
71.1604
56.3967
96.3949
93.3607
235418202353886
6.8182
ckim-gatkSNPtvmap_l150_m1_e0het
83.3287
73.7979
95.6863
90.3850
5126182051242318
3.4632
gduggal-snapfbINDELD1_5HG002complexvar*
94.7329
94.4337
95.0340
57.1180
308941821314231642692
42.1437
gduggal-snapfbINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
78.4631
67.4647
93.7460
41.7311
377618218829589574
97.4533
gduggal-snapvardSNPtimap_l100_m2_e0*
95.1595
96.2807
94.0641
74.3570
471401821466842946281
9.5384
anovak-vgINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_merged*
57.0334
48.7504
68.7072
56.9745
173618251706777550
70.7851
jmaeng-gatkSNPtvmap_l150_m2_e1het
84.1017
75.1633
95.4530
91.0507
5523182555212637
2.6616
qzeng-customSNPtvmap_l150_m1_e0het
83.1414
73.6683
95.4104
89.4270
511718295114246203
82.5203
ciseli-customSNPtiHG002complexvarhomalt
96.5088
99.0536
94.0915
19.4065
1916331831189105118755178
43.6042
gduggal-bwavardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
68.5442
93.9928
53.9399
70.1347
286491831286682448022479
91.8260
gduggal-bwavardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
68.5442
93.9928
53.9399
70.1347
286491831286682448022479
91.8260
ckim-gatkSNPtvmap_l150_m0_e0*
71.0339
56.1092
96.7755
93.2891
234218322341787
8.9744
ckim-gatkSNPtvmap_l150_m2_e0het
83.9328
74.7380
95.7075
90.8782
5420183254182438
3.2922
gduggal-snapvardSNPtimap_l100_m2_e1*
95.1804
96.2979
94.0886
74.3752
476531832471922965284
9.5784
anovak-vgINDELD16_PLUSHG002compoundhet*
28.7549
21.7001
42.6065
32.2197
5081833510687477
69.4323
ltrigg-rtg1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.2969
95.1533
99.5393
51.1225
36065183736299168133
79.1667
rpoplin-dv42INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
96.2804
95.7563
96.8102
77.5473
4149618394142813651297
95.0183
jmaeng-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.7771
97.1844
98.3771
67.7791
635111840632861044906
86.7816
jmaeng-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.7771
97.1844
98.3771
67.7791
635111840632861044906
86.7816
gduggal-bwafbINDEL*lowcmp_SimpleRepeat_quadTR_11to50*
93.9385
90.7361
97.3752
52.7808
18022184018957511394
77.1037
ckim-gatkSNPtvmap_l150_m2_e1het
84.0437
74.9456
95.6560
90.8674
5507184155052509
3.6000
gduggal-bwaplatINDEL*lowcmp_SimpleRepeat_quadTR_11to50homalt
81.7312
69.6640
98.8549
64.9750
4230184242304943
87.7551
gduggal-bwaplatSNPtimap_l150_m0_e0homalt
49.9321
33.2850
99.8913
89.4326
919184291911
100.0000
gduggal-bwafbINDELI1_5HG002compoundhet*
88.8259
85.0923
92.9023
63.5931
10514184211309864824
95.3704