PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
82051-82100 / 86044 show all
mlin-fermikitSNP*map_l250_m2_e1homalt
53.1320
43.3775
68.5465
76.1343
117915391179541500
92.4214
jpowers-varprowlINDELD6_15HG002complexvar*
74.6372
70.9355
78.7466
57.5873
3761154137571014966
95.2663
qzeng-customINDELD6_15HG002compoundhet*
81.7565
82.9255
80.6200
31.3934
7489154285822063963
46.6796
gduggal-bwaplatSNPtilowcmp_SimpleRepeat_quadTR_11to50*
91.9498
85.6224
99.2869
60.0604
9189154391906625
37.8788
ghariani-varprowlINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
44.2731
30.1494
83.2915
76.5745
6661543663133106
79.6992
jpowers-varprowlINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
44.3323
30.1494
83.7121
76.2590
6661543663129106
82.1705
gduggal-bwafbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
94.8782
93.0607
96.7682
51.4476
20706154421469717639
89.1213
ckim-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.0533
97.6374
98.4728
67.8136
63807154463576986844
85.5984
ckim-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.0533
97.6374
98.4728
67.8136
63807154463576986844
85.5984
cchapple-customSNPti*het
99.8339
99.8795
99.7883
21.7295
1280346154512803842716443
16.3108
eyeh-varpipeINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_merged*
33.7995
27.2556
44.4783
55.2641
5801548584729693
95.0617
gduggal-snapplatSNP*map_l150_m2_e0homalt
92.8770
86.7681
99.9113
74.6788
1015115481014299
100.0000
gduggal-snapplatSNP*map_l150_m1_e0het
92.4706
91.9807
92.9658
86.7974
177671549177891346738
54.8291
gduggal-snapvardINDELI16_PLUS*homalt
1.5180
0.7687
60.0000
43.7086
121549513422
64.7059
ckim-isaacSNPtimap_l250_m2_e1het
69.1304
53.0161
99.3186
92.2279
174915501749121
8.3333
qzeng-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
89.5167
81.0229
100.0000
94.3548
66221551700
gduggal-snapplatSNPtilowcmp_SimpleRepeat_quadTR_11to50*
90.3474
85.5479
95.7174
70.9701
91811551918641154
13.1387
anovak-vgSNPtimap_l150_m2_e0homalt
88.3955
79.6350
99.3218
72.4413
6065155160044136
87.8049
anovak-vgSNP*map_l125_m0_e0het
76.4858
87.7448
67.7876
82.7028
1111215521100652301427
27.2849
mlin-fermikitINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
85.0207
91.2790
79.5656
57.4207
1626515541597241024011
97.7816
mlin-fermikitSNP*map_l250_m0_e0*
40.4330
27.1194
79.4239
82.2628
5791556579150132
88.0000
ckim-isaacSNP*map_l250_m2_e0homalt
59.1933
42.0700
99.8233
85.8571
11301556113022
100.0000
gduggal-snapvardINDELD16_PLUSHG002complexvar*
9.5470
5.2952
48.4536
72.9428
8715569410053
53.0000
gduggal-snapfbSNPti*homalt
99.7832
99.8062
99.7602
19.1162
80148315568015321927269
13.9595
gduggal-snapplatSNP*map_l150_m2_e0het
92.7026
92.2615
93.1480
87.6370
185751558185971368748
54.6784
gduggal-snapplatSNP*map_l150_m2_e1homalt
92.9111
86.8268
99.9123
74.6875
1026915581025999
100.0000
anovak-vgSNPtimap_l150_m2_e1homalt
88.4680
79.7478
99.3294
72.4334
6135155860734136
87.8049
astatham-gatkINDEL*HG002compoundhet*
95.0088
94.7931
95.2256
62.9264
2840015602828214181407
99.2243
jmaeng-gatkSNPtiHG002complexvarhet
99.7293
99.5044
99.9553
17.6005
313206156031315614049
35.0000
cchapple-customSNPtiHG002complexvar*
99.8096
99.6932
99.9263
17.3694
5068761560505502373274
73.4584
ciseli-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
0.0000
3.5250
0.0000
0.0000
571560000
gduggal-snapplatSNP*lowcmp_SimpleRepeat_diTR_11to50het
76.7313
74.9840
78.5619
87.2292
4676156047201288113
8.7733
gduggal-snapplatINDELI16_PLUS*homalt
0.0000
0.0000
0.0000
01561000
gduggal-snapfbINDELI16_PLUS*homalt
0.0000
0.0000
0.0000
01561000
eyeh-varpipeINDEL*lowcmp_SimpleRepeat_quadTR_51to200*
44.1195
41.2053
47.4772
55.2735
10941561135514991289
85.9907
anovak-vgINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
56.9297
50.5845
65.0951
55.0427
160115641712918650
70.8061
eyeh-varpipeINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
24.4790
14.1603
90.2314
68.8301
25815643513831
81.5789
hfeng-pmm3INDEL*HG002compoundhethetalt
96.7848
93.7847
99.9831
50.6733
2361515652373142
50.0000
gduggal-snapplatSNP*map_l150_m2_e1het
92.7489
92.3145
93.1874
87.6725
187981565188221376752
54.6512
ciseli-customINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50*
60.2687
57.5149
63.2995
49.8576
2120156621181228856
69.7068
anovak-vgSNPtiHG002compoundhethomalt
82.5870
78.8207
86.7313
34.8753
582815665275807534
66.1710
anovak-vgINDEL*HG002complexvarhomalt
75.7278
94.2021
63.3115
49.8629
254601567259401503214199
94.4585
mlin-fermikitINDELI1_5HG002complexvar*
96.3771
95.3032
97.4754
51.5661
31796156731622819800
97.6801
ndellapenna-hhgaINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
73.5160
59.0220
97.4456
46.9644
2257156720605442
77.7778
ckim-dragenINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.8701
97.6006
98.1411
68.2416
6378315686351312031069
88.8612
ckim-dragenINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.8701
97.6006
98.1411
68.2416
6378315686351312031069
88.8612
hfeng-pmm3INDEL**het
99.4705
99.1923
99.7504
58.0356
1925651568192191481313
65.0728
hfeng-pmm3INDEL**hetalt
96.7703
93.7869
99.9498
57.3944
236691568238941210
83.3333
hfeng-pmm1INDEL**het
99.4245
99.1923
99.6578
58.3471
1925651568192194660374
56.6667
hfeng-pmm1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.3761
95.8604
98.9406
51.0374
36333156936144387350
90.4393