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Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
81951-82000 / 86044 show all
gduggal-bwavardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
55.0595
38.1013
99.2214
43.7774
903146789276
85.7143
eyeh-varpipeINDELI6_15HG002complexvar*
76.1535
69.3656
84.4139
46.8082
332414683320613606
98.8581
anovak-vgINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
0.0000
14.0515
0.0000
0.0000
2401468000
jpowers-varprowlINDELI1_5lowcmp_SimpleRepeat_quadTR_11to50*
71.5827
62.3493
84.0263
65.9228
243114682425461430
93.2755
gduggal-snapplatSNPtimap_l125_m0_e0*
91.6685
88.4893
95.0846
83.9409
11293146911297584340
58.2192
gduggal-snapvardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331het
67.5308
74.8546
61.5124
50.8317
43761470872854614703
86.1198
gduggal-snapvardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
67.5308
74.8546
61.5124
50.8317
43761470872854614703
86.1198
gduggal-bwafbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
94.7484
92.8627
96.7122
44.0182
19126147019885676622
92.0118
ckim-isaacINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
91.0211
84.5394
98.5791
36.6641
80491472804811698
84.4828
rpoplin-dv42INDELI1_5**
99.2493
99.0230
99.4767
57.6844
1491921472149236785730
92.9936
bgallagher-sentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.9919
97.7475
98.2375
67.0385
6387914726365211421030
90.1926
bgallagher-sentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.9919
97.7475
98.2375
67.0385
6387914726365211421030
90.1926
ckim-gatkSNPtvHG002complexvarhomalt
99.2138
98.4513
99.9883
23.0317
93638147393624118
72.7273
jlack-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
94.2610
89.4954
99.5627
34.0219
125581474127515650
89.2857
asubramanian-gatkSNPtvmap_l250_m1_e0het
29.7001
17.4594
99.3631
98.7032
312147531220
0.0000
gduggal-snapvardSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
95.0366
91.2990
99.0933
69.4457
1549814771530014072
51.4286
gduggal-snapvardSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
95.0366
91.2990
99.0933
69.4457
1549814771530014072
51.4286
ghariani-varprowlINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
73.7755
59.7109
96.5075
47.3586
2189147721837955
69.6203
jpowers-varprowlINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
73.8504
59.7109
96.7642
46.8551
2189147721837354
73.9726
gduggal-snapvardSNP*map_l100_m1_e0het
93.2304
96.7393
89.9672
77.3983
438801479433124830369
7.6398
ckim-isaacINDEL*lowcmp_SimpleRepeat_diTR_11to50hetalt
91.6583
85.8616
98.2945
30.7003
899414819279161143
88.8199
mlin-fermikitINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
72.9780
57.9977
98.3917
46.7104
2045148120803434
100.0000
mlin-fermikitINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
72.9780
57.9977
98.3917
46.7104
2045148120803434
100.0000
gduggal-bwaplatINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
86.6565
78.2921
97.0220
41.1897
534514825343164163
99.3902
gduggal-snapfbINDEL*HG002complexvarhetalt
65.6662
59.9081
72.6490
79.8155
221614831097413281
68.0387
ciseli-customSNP*map_l100_m0_e0homalt
87.9778
87.2289
88.7396
61.6447
1013614841010312821041
81.2012
jpowers-varprowlINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_merged*
33.4346
30.2162
37.4205
71.0821
643148564710821074
99.2606
ghariani-varprowlINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50hetalt
0.0000
0.5358
0.0000
0.0000
81485000
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
57.0872
46.0813
75.0000
33.7450
127014861368456454
99.5614
ckim-isaacINDELI6_15HG002complexvar*
77.4674
68.9900
88.3200
51.9231
330614863312438187
42.6941
jpowers-varprowlINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50hetalt
0.0000
0.4689
0.0000
0.0000
71486000
gduggal-snapfbSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331*
81.9557
95.2253
71.9321
77.0498
2965614873004111722436
3.7195
gduggal-snapfbSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
81.9557
95.2253
71.9321
77.0498
2965614873004111722436
3.7195
gduggal-snapplatINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
40.1642
32.5939
52.3148
73.3785
7201489904824648
78.6408
gduggal-bwavardINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50hetalt
0.0000
0.2679
0.0000
0.0000
41489000
ghariani-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
69.8130
95.1115
55.1450
68.5922
289901490291052367422789
96.2617
ghariani-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
69.8130
95.1115
55.1450
68.5922
289901490291052367422789
96.2617
gduggal-snapfbINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
67.8720
57.3310
83.1622
50.3568
200214901215246238
96.7480
astatham-gatkINDEL*HG002compoundhethetalt
96.8345
94.0747
99.7612
51.5025
236881492238125756
98.2456
ciseli-customINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
58.2603
63.0693
54.1327
69.0970
25481492279023641096
46.3621
gduggal-snapplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
59.0350
46.7546
80.0643
63.0729
131114931245310228
73.5484
ciseli-customINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_merged*
36.4192
29.7932
46.8354
63.9946
6341494629714663
92.8571
qzeng-customINDELD6_15HG002compoundhethetalt
81.6710
100.0000
66571494000
qzeng-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
81.4493
100.0000
65641495000
qzeng-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
81.4493
100.0000
65641495000
ltrigg-rtg1SNP*HG002complexvarhet
99.8148
99.6788
99.9511
18.4181
464005149546423522759
25.9912
ckim-isaacSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
95.2997
91.1929
99.7939
58.4384
154801495154953223
71.8750
ckim-isaacSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
95.2997
91.1929
99.7939
58.4384
154801495154953223
71.8750
ckim-vqsrSNPtimap_l250_m2_e0het
69.6152
53.9336
98.1544
97.0778
175514991755330
0.0000
qzeng-customINDELD6_15*hetalt
81.6614
100.0000
66751499000