PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
81901-81950 / 86044 show all
gduggal-snapfbINDEL*lowcmp_SimpleRepeat_diTR_51to200*
39.2277
31.6516
51.5719
45.1410
6651436853801448
55.9301
gduggal-snapvardSNPtvmap_siren*
95.8840
96.8735
94.9146
68.0322
444941436442712372211
8.8955
gduggal-snapvardSNPtimap_sirenhomalt
97.9831
96.2100
99.8227
51.8924
364791437360356454
84.3750
anovak-vgSNPtimap_l150_m0_e0*
77.7546
81.7199
74.1564
85.3644
6424143763732221611
27.5101
gduggal-snapfbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
79.7260
75.6106
84.3152
58.0080
445814382204410248
60.4878
gduggal-snapfbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
79.7260
75.6106
84.3152
58.0080
445814382204410248
60.4878
gduggal-snapplatSNP*map_l100_m0_e0homalt
93.3571
87.6248
99.8920
65.0376
101821438101761111
100.0000
ciseli-customSNPtvmap_sirenhomalt
92.1923
91.6589
92.7320
56.2107
158021438157701236874
70.7120
gduggal-snapplatSNPtimap_l100_m2_e1het
95.5522
95.3521
95.7532
80.1277
295211439295591311671
51.1823
ckim-gatkSNP*map_l250_m2_e1homalt
63.9640
47.0199
100.0000
93.4676
12781440127800
qzeng-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
77.8582
76.3275
79.4516
54.8804
46431440651916861004
59.5492
gduggal-snapplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
26.8433
15.6323
94.9091
54.3189
26714412611410
71.4286
jlack-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
94.2768
89.5307
99.5544
31.1699
123231441125115650
89.2857
dgrover-gatkINDEL*HG002compoundhethetalt
96.9439
94.2772
99.7659
51.7927
237391441238635655
98.2143
anovak-vgSNP*map_l250_m2_e0*
75.1311
81.7121
69.5312
91.5463
6443144263922801650
23.2060
asubramanian-gatkSNPtimap_l250_m2_e0homalt
29.8638
17.5529
100.0000
97.3580
307144230700
gduggal-snapfbINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
54.3642
39.0110
89.6450
28.3898
92314433033534
97.1429
jmaeng-gatkSNP*map_l250_m2_e1homalt
63.8458
46.9095
99.9216
93.0622
12751443127511
100.0000
eyeh-varpipeINDELI6_15lowcmp_SimpleRepeat_diTR_11to50*
51.3203
40.1741
71.0262
37.0164
9691443474119341923
99.4312
ciseli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
57.7786
84.8230
43.8104
49.2561
807614458069103499583
92.5983
gduggal-snapplatSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
74.5876
79.0062
70.6370
92.2018
543814455456226888
3.8801
hfeng-pmm1SNPti**
99.9548
99.9307
99.9789
16.7547
20840651446208400744067
15.2273
ckim-isaacINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
92.5840
86.9698
98.9730
26.4574
96581447992610393
90.2913
gduggal-snapplatSNPtvmap_l125_m2_e0*
93.3644
91.2184
95.6138
83.0664
15041144815041690359
52.0290
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
78.4796
67.4314
93.8575
34.5759
299814488022525510
97.1429
dgrover-gatkINDEL**hetalt
96.9073
94.2584
99.7094
58.4640
237881449240187068
97.1429
ckim-isaacSNPtimap_l150_m0_e0homalt
64.3926
47.5190
99.8478
66.4710
13121449131222
100.0000
jmaeng-gatkINDELI1_5**
99.2409
99.0383
99.4444
59.6817
1492151449149263834391
46.8825
gduggal-snapplatINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
71.3299
69.4719
73.2899
58.1798
33021451472517221302
75.6098
gduggal-snapvardINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
74.0214
58.9765
99.3707
59.0788
20861451124747971
89.8734
asubramanian-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
96.2302
96.1664
96.2940
60.8295
3644914533910515051051
69.8339
ckim-dragenSNP***
99.8268
99.9524
99.7015
21.8489
3053166145330537319143533
5.8296
gduggal-snapfbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
81.1651
84.7285
77.8894
53.1421
80671454806722902086
91.0917
anovak-vgSNP*map_l250_m2_e1*
75.2143
81.7954
69.6133
91.5868
6533145464812829654
23.1177
gduggal-snapplatSNPtvmap_l125_m2_e1*
93.3986
91.2649
95.6344
83.1005
15202145515203694360
51.8732
ckim-isaacINDELD6_15HG002compoundhet*
87.3304
83.8888
91.0664
22.5432
757614557472733687
93.7244
cchapple-customSNP*HG002complexvarhet
99.7839
99.6872
99.8808
18.7433
4640411456463256553394
71.2477
ltrigg-rtg2INDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.0121
98.4584
99.5720
70.6731
92993145693299401200
49.8753
mlin-fermikitINDELD1_5HG002complexvar*
96.3667
95.5494
97.1980
54.2316
31259145631081896836
93.3036
gduggal-snapvardINDEL*lowcmp_SimpleRepeat_quadTR_11to50hetalt
0.0000
45.6919
0.0000
0.0000
12251456000
gduggal-bwafbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
92.3938
89.4378
95.5519
45.2869
12329145613383623612
98.2343
jmaeng-gatkSNPtvmap_l125_m0_e0het
78.5795
66.8939
95.2119
92.0071
2944145729431486
4.0541
asubramanian-gatkSNPtimap_l250_m2_e1homalt
29.9424
17.6072
100.0000
97.3595
312146031200
ciseli-customSNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
88.8947
97.3720
81.7754
63.9228
5416914625435212113797
6.5797
egarrison-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
78.0369
75.9494
80.2425
77.9111
46201463469911571067
92.2213
eyeh-varpipeINDEL*lowcmp_SimpleRepeat_diTR_11to50het
92.5067
90.7170
94.3684
38.1735
1429714632577215381472
95.7087
jmaeng-gatkSNPtvHG002complexvarhomalt
99.2171
98.4618
99.9840
23.0284
936481463936341513
86.6667
anovak-vgINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
60.4452
67.0715
55.0104
41.9298
29821464475438883114
80.0926
ckim-gatkSNPtvmap_l125_m0_e0het
78.5920
66.7348
95.5729
91.8237
2937146429361368
5.8824
ciseli-customINDELI1_5lowcmp_SimpleRepeat_quadTR_11to50*
68.7950
62.4006
76.6496
65.6998
243314662393729415
56.9273