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Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
81801-81850 / 86044 show all
qzeng-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
92.9598
95.4921
90.5582
61.3692
2910613745945661993476
56.0736
qzeng-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
80.6665
100.0000
57371375000
gduggal-bwaplatSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
87.2311
80.0232
95.8659
91.4316
55081375551923831
13.0252
hfeng-pmm2SNPti**
99.9484
99.9340
99.9629
17.4396
20841351376208407777472
9.3023
gduggal-bwaplatSNPtvlowcmp_SimpleRepeat_quadTR_11to50het
82.0473
70.6121
97.9019
63.3528
3311137833137111
15.4930
gduggal-bwavardSNPtimap_l100_m2_e0*
96.6693
97.1855
96.1585
74.8078
475831378471341883157
8.3378
ciseli-customSNPtvHG002compoundhet*
66.9226
84.5568
55.3744
51.6390
7545137875736103515
8.4385
gduggal-bwaplatINDELD6_15HG002complexvar*
83.5998
73.9721
96.1087
66.0264
392213803927159104
65.4088
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
73.8753
73.0416
74.7283
69.3443
3739138038501302863
66.2826
ghariani-varprowlINDELI1_5lowcmp_SimpleRepeat_quadTR_11to50*
72.7782
64.6063
83.3167
68.8822
251913802512503427
84.8907
gduggal-bwafbINDELD1_5HG002compoundhet*
91.0728
88.7045
93.5709
64.7882
10853138211658801716
89.3883
ckim-vqsrSNPtimap_l250_m2_e1homalt
36.0019
21.9526
100.0000
96.7910
389138338900
ghariani-varprowlINDELD6_15HG002complexvar*
76.3894
73.9155
79.0345
58.8274
3919138339131038969
93.3526
anovak-vgINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331*
15.0284
9.6078
34.4828
60.5442
1471383140266110
41.3534
anovak-vgINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
15.0284
9.6078
34.4828
60.5442
1471383140266110
41.3534
gduggal-snapplatSNP*map_l250_m2_e1*
87.9173
82.6718
93.8735
93.9495
660313846604431208
48.2599
gduggal-bwafbINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
81.8219
73.9368
91.5896
61.6810
392913852973273264
96.7033
egarrison-hhgaSNPtv*het
99.8548
99.7659
99.9438
20.8578
590311138559033233244
13.2530
gduggal-bwafbSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331*
95.6219
95.5496
95.6944
76.1461
297571386298271342182
13.5618
gduggal-bwafbSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
95.6219
95.5496
95.6944
76.1461
297571386298271342182
13.5618
gduggal-bwafbINDEL*lowcmp_SimpleRepeat_diTR_11to50hetalt
91.3561
86.7685
96.4558
48.1730
9089138625319392
98.9247
gduggal-bwavardSNPtimap_l100_m2_e1*
96.6812
97.1951
96.1726
74.8216
480971388476421896159
8.3861
jmaeng-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.4052
96.7970
98.0210
61.6169
41947138841755843795
94.3060
ltrigg-rtg2INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
98.0559
96.7947
99.3503
55.8922
41946138942206276166
60.1449
gduggal-snapplatSNPtvlowcmp_SimpleRepeat_quadTR_11to50het
79.5706
70.3775
91.5264
68.8371
33001389331630718
5.8632
qzeng-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
80.6384
100.0000
57851389000
mlin-fermikitINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
78.9545
65.5001
99.3652
25.9198
2639139026611717
100.0000
mlin-fermikitINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
83.0274
90.4837
76.7064
50.3167
1322613911293539283882
98.8289
eyeh-varpipeINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
26.6884
15.5852
92.8021
65.3298
25713923612827
96.4286
eyeh-varpipeINDELI1_5*homalt
96.1261
97.6964
94.6055
51.8219
5903613925897833633305
98.2753
gduggal-bwaplatSNPtvmap_l125_m0_e0homalt
54.3607
37.3255
100.0000
86.5727
829139282900
egarrison-hhgaINDELI1_5**
99.2965
99.0761
99.5179
56.5802
1492721392149236723442
61.1342
ciseli-customSNPtvmap_l150_m0_e0*
72.3723
66.6267
79.2023
86.0382
278113932780730179
24.5205
ciseli-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331het
41.2863
29.3252
69.7259
75.3742
5781393585254203
79.9213
ciseli-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
41.2863
29.3252
69.7259
75.3742
5781393585254203
79.9213
ndellapenna-hhgaINDEL*HG002complexvarhet
97.4850
96.9835
97.9917
54.0711
44818139444840919671
73.0141
anovak-vgINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
51.1017
43.2290
62.4805
48.0708
10631396439826411993
75.4638
astatham-gatkSNPtvmap_l100_m0_e0*
93.1039
87.3962
99.6092
73.8497
9687139796863811
28.9474
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331*
94.1491
90.4125
98.2078
67.8829
13174139713261242122
50.4132
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
94.1491
90.4125
98.2078
67.8829
13174139713261242122
50.4132
ciseli-customSNPtimap_l125_m1_e0homalt
88.5271
87.3246
89.7632
65.2408
9645140096281098891
81.1475
jmaeng-gatkSNPtimap_l150_m0_e0homalt
66.0199
49.2937
99.9266
83.9216
13611400136111
100.0000
gduggal-bwavardSNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
97.5998
97.4834
97.7164
62.9555
542311400536171253392
31.2849
ckim-gatkSNPtiHG002complexvarhet
99.7549
99.5549
99.9557
17.5388
313365140131331513950
35.9712
egarrison-hhgaINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331*
80.2083
71.8944
90.6965
69.6512
359414053646374325
86.8984
egarrison-hhgaINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
80.2083
71.8944
90.6965
69.6512
359414053646374325
86.8984
eyeh-varpipeINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
73.9522
65.2228
85.3794
65.4520
263514052914499370
74.1483
ckim-vqsrSNPtimap_l250_m1_e0het
68.5076
52.6617
97.9937
97.0232
156314051563320
0.0000
ckim-isaacSNPtilowcmp_AllRepeats_lt51bp_gt95identity_merged*
96.8280
94.9712
98.7588
48.1636
26553140626734336168
50.0000
ckim-isaacSNPtimap_l250_m1_e0het
68.7954
52.6280
99.3007
91.8721
156214061562110
0.0000