PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
81601-81650 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.0368 | 92.3975 | 99.9745 | 38.5038 | 15435 | 1270 | 15656 | 4 | 4 | 100.0000 | |
| qzeng-custom | INDEL | I1_5 | * | het | 98.4046 | 98.3920 | 98.4173 | 59.0408 | 77770 | 1271 | 82639 | 1329 | 852 | 64.1084 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 76.0659 | 65.5275 | 90.6435 | 34.5437 | 2416 | 1271 | 2451 | 253 | 251 | 99.2095 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 77.7475 | 64.0656 | 98.8601 | 79.0638 | 2266 | 1271 | 2255 | 26 | 19 | 73.0769 | |
| gduggal-bwaplat | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 93.9544 | 88.7394 | 99.8206 | 58.1571 | 10024 | 1272 | 10013 | 18 | 18 | 100.0000 | |
| mlin-fermikit | INDEL | * | map_l100_m2_e1 | * | 75.3445 | 66.1342 | 87.5352 | 80.6829 | 2484 | 1272 | 2486 | 354 | 273 | 77.1186 | |
| jmaeng-gatk | SNP | tv | map_l250_m1_e0 | * | 67.4516 | 51.9456 | 96.1538 | 96.4328 | 1375 | 1272 | 1375 | 55 | 2 | 3.6364 | |
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 92.7880 | 87.7185 | 98.4794 | 33.6241 | 9085 | 1272 | 9067 | 140 | 97 | 69.2857 | |
| jlack-gatk | SNP | * | * | het | 99.5639 | 99.9321 | 99.1985 | 27.0831 | 1872315 | 1272 | 1872190 | 15127 | 441 | 2.9153 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 85.2297 | 77.7913 | 94.2409 | 52.4466 | 4459 | 1273 | 4451 | 272 | 265 | 97.4265 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 79.0138 | 67.0974 | 96.0770 | 80.1746 | 2596 | 1273 | 2596 | 106 | 58 | 54.7170 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 1.6229 | 0.0000 | 0.0000 | 21 | 1273 | 0 | 0 | 0 | ||
| gduggal-snapplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 47.8156 | 40.9091 | 57.5278 | 84.8321 | 882 | 1274 | 982 | 725 | 38 | 5.2414 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.5832 | 95.9437 | 99.2798 | 56.3557 | 30134 | 1274 | 30188 | 219 | 93 | 42.4658 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.5832 | 95.9437 | 99.2798 | 56.3557 | 30134 | 1274 | 30188 | 219 | 93 | 42.4658 | |
| gduggal-bwavard | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 80.6313 | 97.3607 | 68.8080 | 74.0750 | 46997 | 1274 | 47086 | 21345 | 20055 | 93.9564 | |
| ndellapenna-hhga | INDEL | * | * | homalt | 98.8395 | 98.9790 | 98.7005 | 54.9139 | 123894 | 1278 | 123877 | 1631 | 1021 | 62.5996 | |
| cchapple-custom | SNP | * | map_siren | het | 97.7546 | 98.5944 | 96.9290 | 63.2688 | 89712 | 1279 | 89826 | 2846 | 543 | 19.0794 | |
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 65.1835 | 87.6412 | 51.8876 | 46.8905 | 9077 | 1280 | 9044 | 8386 | 7588 | 90.4841 | |
| ckim-gatk | SNP | ti | map_l250_m2_e0 | het | 74.5328 | 60.6638 | 96.6226 | 96.6749 | 1974 | 1280 | 1974 | 69 | 9 | 13.0435 | |
| gduggal-snapplat | SNP | * | map_l125_m0_e0 | het | 91.0262 | 89.8926 | 92.1888 | 87.3834 | 11384 | 1280 | 11389 | 965 | 535 | 55.4404 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 72.9555 | 67.4217 | 79.4788 | 54.5797 | 2649 | 1280 | 2684 | 693 | 618 | 89.1775 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 42.9905 | 27.6680 | 96.3481 | 42.7526 | 490 | 1281 | 1583 | 60 | 60 | 100.0000 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.2824 | 98.0398 | 98.5261 | 67.2886 | 64070 | 1281 | 63840 | 955 | 849 | 88.9005 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 98.2824 | 98.0398 | 98.5261 | 67.2886 | 64070 | 1281 | 63840 | 955 | 849 | 88.9005 | |
| gduggal-snapvard | INDEL | * | HG002compoundhet | het | 60.5436 | 68.6950 | 54.1215 | 56.4812 | 2811 | 1281 | 24103 | 20432 | 15973 | 78.1764 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 9.1482 | 5.4613 | 28.1579 | 72.1408 | 74 | 1281 | 107 | 273 | 176 | 64.4689 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 86.3639 | 77.4336 | 97.6228 | 60.1470 | 4399 | 1282 | 4394 | 107 | 91 | 85.0467 | |
| ckim-gatk | INDEL | I1_5 | * | * | 99.3427 | 99.1491 | 99.5371 | 59.3239 | 149382 | 1282 | 149430 | 695 | 401 | 57.6978 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 89.7592 | 95.7940 | 84.4397 | 65.4433 | 29198 | 1282 | 30682 | 5654 | 5190 | 91.7934 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 89.7592 | 95.7940 | 84.4397 | 65.4433 | 29198 | 1282 | 30682 | 5654 | 5190 | 91.7934 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 92.5939 | 86.2091 | 100.0000 | 89.7909 | 8014 | 1282 | 83 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D1_5 | * | het | 98.8729 | 98.5350 | 99.2132 | 51.9513 | 86291 | 1283 | 85238 | 676 | 474 | 70.1183 | |
| anovak-vg | SNP | ti | map_l150_m1_e0 | het | 75.5864 | 89.6281 | 65.3485 | 80.5450 | 11087 | 1283 | 11006 | 5836 | 1295 | 22.1899 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 90.4147 | 91.9985 | 88.8845 | 55.6709 | 14763 | 1284 | 15793 | 1975 | 866 | 43.8481 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 83.1109 | 76.3884 | 91.1308 | 38.7228 | 4154 | 1284 | 411 | 40 | 40 | 100.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 68.8650 | 53.4107 | 96.9038 | 66.6154 | 1472 | 1284 | 1471 | 47 | 36 | 76.5957 | |
| jmaeng-gatk | SNP | ti | map_l250_m2_e0 | het | 74.4705 | 60.5101 | 96.8043 | 96.7872 | 1969 | 1285 | 1969 | 65 | 8 | 12.3077 | |
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 89.0395 | 80.9340 | 98.9493 | 51.2411 | 5459 | 1286 | 5462 | 58 | 26 | 44.8276 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.2324 | 0.0000 | 0.0000 | 3 | 1288 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 41.1872 | 0.0000 | 0.0000 | 902 | 1288 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.2324 | 0.0000 | 0.0000 | 3 | 1288 | 0 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.1631 | 95.7743 | 98.5927 | 68.0014 | 29192 | 1288 | 29144 | 416 | 97 | 23.3173 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.1631 | 95.7743 | 98.5927 | 68.0014 | 29192 | 1288 | 29144 | 416 | 97 | 23.3173 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.4637 | 0.0000 | 0.0000 | 6 | 1288 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.2324 | 0.0000 | 0.0000 | 3 | 1288 | 0 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.9756 | 96.4774 | 99.5211 | 49.0897 | 35303 | 1289 | 35537 | 171 | 109 | 63.7427 | |
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.3091 | 0.0000 | 0.0000 | 4 | 1290 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.3091 | 0.0000 | 0.0000 | 4 | 1290 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 79.1080 | 66.2395 | 98.1818 | 59.6577 | 2533 | 1291 | 162 | 3 | 2 | 66.6667 | |