PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
81251-81300 / 86044 show all
asubramanian-gatkINDELI6_15**
96.7639
95.5082
98.0531
53.5929
23708111523721471428
90.8705
jpowers-varprowlINDELI1_5lowcmp_SimpleRepeat_quadTR_11to50hetalt
0.0000
1.4147
0.0000
0.0000
161115000
qzeng-customSNPtimap_l250_m1_e0het
73.3752
62.4326
88.9688
96.5528
185311151855230193
83.9130
ndellapenna-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
73.6158
59.0525
97.7135
42.8517
1608111514533429
85.2941
ltrigg-rtg2INDELD1_5**
99.4769
99.2395
99.7155
55.7210
1456291116145463415145
34.9398
jpowers-varprowlINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
49.6437
72.3762
37.7781
62.4735
29241116293848394790
98.9874
bgallagher-sentieonINDELI1_5**
99.4227
99.2586
99.5873
58.2134
1495471117149597620500
80.6452
gduggal-snapfbSNPtimap_l100_m2_e0*
97.7846
97.7165
97.8527
68.4501
478431118478481050457
43.5238
gduggal-snapfbINDELD1_5HG002complexvarhet
94.7486
94.6159
94.8816
54.6441
196471118206321113329
29.5597
mlin-fermikitINDEL*map_sirenhet
83.7074
75.1996
94.3858
76.9241
339011183396202141
69.8020
mlin-fermikitSNPtvmap_l125_m0_e0homalt
55.7975
49.6173
63.7363
55.1608
110211191102627574
91.5470
ndellapenna-hhgaINDELI6_15**
96.5902
95.4921
97.7138
48.4477
23704111923721555427
76.9369
gduggal-snapvardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
56.7831
40.6681
94.0520
68.9496
76711197594845
93.7500
gduggal-snapplatSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
71.9561
72.9860
70.9549
92.4413
302611203039124464
5.1447
gduggal-snapfbSNPtimap_l100_m2_e1*
97.8010
97.7367
97.8655
68.4763
483651120483701055457
43.3175
qzeng-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
86.6043
76.5298
99.7333
31.0028
36521120149644
100.0000
jmaeng-gatkSNPtvmap_l150_m0_e0het
74.0589
60.6050
95.1907
94.3590
172311201722875
5.7471
ciseli-customSNPtvmap_l100_m1_e0homalt
89.0533
87.6147
90.5399
62.3935
792311207915827623
75.3325
gduggal-bwaplatINDELD6_15lowcmp_SimpleRepeat_diTR_11to50hetalt
85.5129
76.5088
96.9190
34.7374
365111213649116114
98.2759
eyeh-varpipeINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50*
92.2052
90.5600
93.9113
48.2920
10754112112339800737
92.1250
jlack-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
96.8636
96.4960
97.2340
52.6642
30871112130794876794
90.6393
ckim-isaacINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
92.2388
86.5886
98.6779
34.8864
7244112272409780
82.4742
egarrison-hhgaINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
75.3208
65.0467
89.4493
64.1933
208811222128251224
89.2430
ndellapenna-hhgaINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
94.2017
97.6736
90.9681
70.0370
4714811234845648114484
93.2031
ciseli-customSNPtvmap_l100_m2_e0homalt
89.1677
87.8120
90.5658
64.9670
809111238083842633
75.1781
ciseli-customSNPtvHG002complexvarhomalt
95.4763
98.8182
92.3530
24.8215
9398711249258376662593
33.8247
egarrison-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
89.6104
96.3123
83.7805
65.9807
2935611243041458885443
92.4423
egarrison-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
89.6104
96.3123
83.7805
65.9807
2935611243041458885443
92.4423
rpoplin-dv42INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
95.4697
91.8338
99.4055
29.1133
126401124127077675
98.6842
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200*
23.7665
14.5247
65.3430
41.4376
19111241819638
39.5833
gduggal-bwavardINDELI1_5lowcmp_SimpleRepeat_quadTR_11to50hetalt
0.0000
0.6189
0.0000
0.0000
71124000
gduggal-snapplatINDELI1_5lowcmp_SimpleRepeat_quadTR_11to50het
24.5228
33.9401
19.1964
80.6408
5781125602253412
0.4736
ndellapenna-hhgaINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
79.5452
72.3383
88.3470
65.9371
294211253025399313
78.4461
mlin-fermikitINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
72.5735
57.3752
98.7253
40.9262
1517112715492020
100.0000
raldana-dualsentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
95.8057
91.9684
99.9771
32.4064
1290511271309833
100.0000
dgrover-gatkSNP***
99.9456
99.9631
99.9282
19.2565
3053492112730533432195207
9.4305
ckim-gatkSNPtvmap_l150_m0_e0het
74.0126
60.3588
95.6497
94.2325
171611271715787
8.9744
astatham-gatkINDELI1_5**
99.4616
99.2520
99.6722
58.6147
1495371127149586492402
81.7073
gduggal-snapplatINDEL*lowcmp_SimpleRepeat_diTR_51to200hetalt
17.8468
9.9840
84.0000
62.9630
12511271262419
79.1667
gduggal-snapfbINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
69.8922
57.3374
89.4866
50.3641
151611283664339
90.6977
rpoplin-dv42SNPti**
99.9621
99.9459
99.9782
17.6958
208438311282084320454276
60.7930
gduggal-bwafbINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
77.2155
68.0091
89.3048
56.7130
239811286688079
98.7500
gduggal-bwafbINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
77.2155
68.0091
89.3048
56.7130
239811286688079
98.7500
gduggal-bwafbINDEL*lowcmp_SimpleRepeat_quadTR_11to50het
93.7221
89.8362
97.9593
52.4760
9979112912193254153
60.2362
gduggal-snapfbINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
71.3980
62.1268
83.9216
50.4662
185211291070205197
96.0976
ciseli-customSNPtvmap_l250_m2_e0*
66.4506
60.8258
73.2218
92.3535
175311291750640134
20.9375
anovak-vgSNPtvmap_l125_m1_e0homalt
88.9946
80.7338
99.1387
66.3699
4731112947194130
73.1707
jlack-gatkINDEL*lowcmp_SimpleRepeat_diTR_11to50*
97.2911
96.9146
97.6705
52.3019
35463112935387844761
90.1659
gduggal-snapvardINDEL*lowcmp_SimpleRepeat_triTR_11to50homalt
63.5738
47.4907
96.1285
37.8710
1022113011674744
93.6170
ciseli-customSNPtvmap_l150_m0_e0het
67.3971
60.2533
76.4627
88.5079
17131130171252718
3.4156