PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
80901-80950 / 86044 show all
ltrigg-rtg1INDELD1_5*het
99.2847
98.8627
99.7103
52.7629
865789968637825152
20.7171
ciseli-customSNP*map_l125_m0_e0homalt
85.9540
85.1609
86.7620
68.6495
57169965702870708
81.3793
jpowers-varprowlINDELD6_15HG002complexvarhetalt
0.0000
1.5795
0.0000
0.0000
16997000
ltrigg-rtg1SNP*map_sirenhet
99.2561
98.9032
99.6115
48.6936
899929988999635116
4.5584
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50*
77.6919
72.9319
83.1165
45.6084
26899982939597575
96.3149
gduggal-bwaplatSNPtilowcmp_SimpleRepeat_quadTR_11to50het
91.5844
85.2017
99.0009
65.9710
574699857475817
29.3103
raldana-dualsentieonSNPtv**
99.9049
99.8971
99.9127
21.2799
96869299896861284644
5.2010
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_diTR_51to200*
24.3587
15.4953
56.9132
61.6995
18399817713497
72.3881
ckim-dragenINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.1413
92.8877
99.6311
33.7242
13034998132344949
100.0000
cchapple-customSNP*map_l150_m1_e0*
96.5908
96.7363
96.4458
77.1687
29610999296051091240
21.9982
gduggal-snapvardSNP*map_l100_m2_e0homalt
98.0484
96.3703
99.7860
62.8472
26524999261075643
76.7857
bgallagher-sentieonSNP***
99.9296
99.9673
99.8919
18.9151
305362099930534713303195
5.9037
ltrigg-rtg1SNPtiHG002complexvarhet
99.8233
99.6823
99.9646
17.0356
313766100031377811123
20.7207
gduggal-snapvardINDELI1_5HG002complexvarhetalt
0.0000
41.9710
0.0000
0.0000
7241001000
gduggal-snapplatINDELI1_5HG002complexvarhetalt
55.6197
42.0046
82.2940
85.5161
7251001739159112
70.4403
qzeng-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
87.4763
84.1506
91.0757
53.9857
532010029889969796
82.1465
qzeng-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
87.4763
84.1506
91.0757
53.9857
532010029889969796
82.1465
jpowers-varprowlINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200*
23.4714
18.6688
31.6005
60.9925
2301002231500487
97.4000
cchapple-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.9331
96.8097
99.0829
51.7183
30406100231224289257
88.9273
cchapple-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.9331
96.8097
99.0829
51.7183
30406100231224289257
88.9273
mlin-fermikitSNPtimap_l250_m2_e1homalt
54.4040
43.3973
72.8910
76.6541
7691003769286261
91.2587
ghariani-varprowlINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200*
26.8490
23.6502
31.0484
54.2013
3111004308684676
98.8304
asubramanian-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
95.6166
92.7056
98.7164
31.4832
12760100413612177161
90.9605
gduggal-snapplatSNPtilowcmp_SimpleRepeat_quadTR_11to50het
89.2479
85.0979
93.8235
76.4116
57391005574237840
10.5820
gduggal-bwaplatINDELD6_15*homalt
90.8801
84.1132
98.8312
57.2595
5321100553276357
90.4762
gduggal-snapfbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
83.6293
78.9187
88.9381
47.0175
376610061809225103
45.7778
anovak-vgINDEL*map_l100_m2_e0*
72.4393
72.7593
72.1222
84.8313
2687100627631068640
59.9251
ltrigg-rtg1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.0483
92.8307
99.4969
46.1918
130261006132506766
98.5075
ghariani-varprowlSNPtiHG002complexvarhet
99.4535
99.6801
99.2280
19.8744
3137541007313878244284
3.4398
gduggal-bwaplatINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
85.4276
75.0062
99.2121
42.1023
3022100730222422
91.6667
dgrover-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.8990
97.6739
98.1251
62.1451
42327100842130805744
92.4224
ckim-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.0921
92.8093
99.6158
30.7146
130231009132225151
100.0000
rpoplin-dv42INDEL*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
91.3657
89.9732
92.8019
79.8114
906310108999698633
90.6877
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
91.9132
85.7987
98.9660
29.1571
6102101064136758
86.5672
ckim-isaacINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
83.6123
74.0570
95.9987
49.9006
28861011290312183
68.5950
ckim-vqsrINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.0845
92.7950
99.6157
30.7178
130211011132205151
100.0000
rpoplin-dv42INDELD1_5**
99.4429
99.3110
99.5751
58.2332
1457341011145779622549
88.2637
gduggal-bwavardINDELI1_5HG002complexvarhomalt
96.0632
92.4747
99.9414
32.6716
1243610121193175
71.4286
raldana-dualsentieonINDEL*HG002complexvarhet
98.7829
97.8101
99.7752
56.2974
4520010124483110172
71.2871
ndellapenna-hhgaSNP*map_sirenhet
99.3524
98.8878
99.8214
53.1990
8997910128998016158
36.0248
bgallagher-sentieonINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.0261
98.9285
99.1239
73.3821
93437101293346825733
88.8485
gduggal-bwaplatINDELI1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
84.4268
73.3771
99.3944
39.7122
2792101327901715
88.2353
gduggal-snapvardSNP*map_l100_m2_e1homalt
98.0418
96.3556
99.7880
62.8493
267831013263575643
76.7857
gduggal-bwafbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
91.8646
85.7424
98.9282
41.1728
609810149231010
100.0000
ndellapenna-hhgaSNPtvHG002complexvar*
99.7569
99.5881
99.9262
21.8704
2451381014245164181131
72.3757
ckim-isaacSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
95.3063
91.2223
99.7730
55.8289
105381014105512418
75.0000
ckim-isaacSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
95.3063
91.2223
99.7730
55.8289
105381014105512418
75.0000
anovak-vgINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
31.4802
22.9894
49.9162
51.5028
3031015298299239
79.9331
cchapple-customSNP*map_l150_m2_e0*
96.6523
96.8134
96.4917
78.8019
308371015308321121246
21.9447
ltrigg-rtg1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.4780
95.4382
99.6070
47.2963
212351015212908455
65.4762