PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
80801-80850 / 86044 show all
gduggal-snapfbSNPtimap_l125_m2_e1*
96.9811
96.8334
97.1293
73.9180
2960196829605875409
46.7429
jmaeng-gatkINDELI1_5HG002compoundhethetalt
95.4604
91.3394
99.9708
56.0929
102099681026633
100.0000
raldana-dualsentieonINDELD1_5HG002compoundhet*
94.6881
92.0801
97.4481
64.3836
1126696911265295292
98.9831
anovak-vgSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
95.1935
94.2916
96.1127
68.3224
1600696916096651464
71.2750
anovak-vgSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
95.1935
94.2916
96.1127
68.3224
1600696916096651464
71.2750
astatham-gatkSNPtimap_l150_m0_e0*
93.2170
87.6733
99.5090
82.5398
689296968903415
44.1176
ghariani-varprowlSNP*map_siren*
98.7774
99.3373
98.2237
61.6367
1452599691452632627430
16.3685
jmaeng-gatkINDELI1_5*hetalt
95.4538
91.3354
99.9611
60.3706
102259701028344
100.0000
astatham-gatkSNP*map_l250_m2_e0het
89.2552
81.3246
98.8996
92.2674
422497042244712
25.5319
cchapple-customSNP*map_l100_m1_e0het
96.8285
97.8593
95.8192
72.2809
44388971444401939401
20.6808
ltrigg-rtg1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.4336
95.2855
99.6808
39.8879
19625971196736352
82.5397
ckim-isaacINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331het
92.5242
92.9345
92.1175
55.9701
12785972124461065828
77.7465
ckim-isaacINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
92.5242
92.9345
92.1175
55.9701
12785972124461065828
77.7465
gduggal-bwafbINDELD1_5HG002complexvar*
98.0343
97.0289
99.0607
56.8977
3174397231851302219
72.5166
gduggal-bwafbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
93.4068
87.9802
99.5467
30.4101
712297321961010
100.0000
bgallagher-sentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.1646
92.9308
99.6316
30.7725
12791973129824848
100.0000
ghariani-varprowlINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
0.2051
0.0000
0.0000
2973000
ckim-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.1540
92.9308
99.6088
28.2869
12791973129855151
100.0000
jpowers-varprowlINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
0.2051
0.0000
0.0000
2973000
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
72.7114
67.5333
78.7495
70.8829
20269742179588262
44.5578
gduggal-bwaplatSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
91.1118
85.3688
97.6832
88.4817
5683974569213524
17.7778
gduggal-bwavardINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
0.1026
0.0000
0.0000
1974000
ciseli-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
75.2916
86.8093
66.4721
57.3739
6410974683434471755
50.9138
gduggal-snapvardSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
90.9891
97.2501
85.4856
71.8215
34445974341195793280
4.8334
gduggal-snapvardSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
95.1902
91.5599
99.1202
67.5348
10577975104789344
47.3118
gduggal-snapvardSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
95.1902
91.5599
99.1202
67.5348
10577975104789344
47.3118
gduggal-snapplatINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
0975000
gduggal-snapfbINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
0975000
mlin-fermikitINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331het
90.3770
92.9127
87.9760
55.1468
127829751273117401664
95.6322
mlin-fermikitINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
90.3770
92.9127
87.9760
55.1468
127829751273117401664
95.6322
ckim-vqsrINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.1462
92.9163
99.6087
28.2901
12789975129835151
100.0000
ghariani-varprowlINDEL*lowcmp_SimpleRepeat_homopolymer_6to10*
96.3238
96.5464
96.1023
63.4311
27284976272701106763
68.9873
hfeng-pmm1SNPtiHG002complexvarhet
99.8377
99.6899
99.9860
16.6225
3137909763137394410
22.7273
astatham-gatkINDEL**het
99.5127
99.4973
99.5281
60.7701
193157976192779914573
62.6915
asubramanian-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.7710
96.8925
98.6656
61.3340
3043297630464412353
85.6796
asubramanian-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.7710
96.8925
98.6656
61.3340
3043297630464412353
85.6796
qzeng-customINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
85.6723
100.0000
5836976000
ckim-isaacINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
90.5315
93.3228
87.9023
49.1930
136419761270117481525
87.2426
qzeng-customINDELD1_5*het
98.6409
98.8844
98.3986
58.7330
865979779610315641050
67.1355
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.6838
97.4223
97.9467
56.1751
3692597736731770739
95.9740
gduggal-bwaplatINDEL*map_sirenhet
87.4010
78.3274
98.8522
90.8215
353197735314115
36.5854
gduggal-snapvardINDEL*lowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
18.1590
0.0000
0.0000
217978000
gduggal-bwaplatINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
87.6040
79.4025
97.6949
50.4555
377497937728975
84.2697
raldana-dualsentieonINDELI1_5HG002compoundhethetalt
95.4154
91.2409
99.9902
55.7998
101989791025311
100.0000
jpowers-varprowlINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
28.4651
25.7208
31.8650
61.9879
339979340727723
99.4498
ltrigg-rtg1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.0808
92.8872
99.5018
43.2116
12785979129816564
98.4615
astatham-gatkSNP*map_l250_m2_e1het
89.3080
81.4020
98.9151
92.3164
428597942854712
25.5319
ckim-dragenINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.1377
92.8872
99.6239
30.9811
12785979129794949
100.0000
mlin-fermikitINDELI1_5*homalt
98.3593
98.3799
98.3387
50.5872
59449979593711003989
98.6042
hfeng-pmm1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
98.1042
96.9367
99.3002
49.5751
3101298030935218193
88.5321