PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
80701-80750 / 86044 show all
gduggal-snapvardSNPtimap_l100_m0_e0*
92.9211
95.6915
90.3065
76.7821
20833938206542217198
8.9310
ghariani-varprowlINDELI1_5*het
92.7410
98.8133
87.3718
65.8570
78102938781201129110122
89.6466
gduggal-snapfbINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331het
62.8725
52.4099
78.5542
50.1920
10339381630445427
95.9551
gduggal-snapfbINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
62.8725
52.4099
78.5542
50.1920
10339381630445427
95.9551
gduggal-bwavardINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
0.0000
0.5297
0.0000
0.0000
5939000
anovak-vgINDELD16_PLUS*het
72.6101
70.2754
75.1054
49.0881
22209392495827601
72.6723
rpoplin-dv42INDEL**homalt
99.5190
99.2498
99.7896
55.3247
124233939124240262239
91.2214
ckim-vqsrINDELI1_5HG002compoundhethetalt
95.5975
91.5988
99.9612
55.8418
102389391029944
100.0000
jli-customSNP**het
99.9088
99.9498
99.8677
18.9256
187264794018725582480145
5.8468
gduggal-bwafbINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
82.5353
76.8626
89.1121
55.4494
31269413282401398
99.2519
ltrigg-rtg2SNPtv*het
99.7405
99.8410
99.6402
19.4900
590763941590991213460
2.8116
hfeng-pmm3INDELD1_5HG002compoundhet*
95.5863
92.3089
99.1049
60.5859
112949411129310295
93.1373
jlack-gatkINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.8272
98.5395
99.1166
73.0877
6349094163503566450
79.5053
ckim-vqsrINDELI1_5*hetalt
95.5907
91.5945
99.9516
60.1444
102549411031655
100.0000
ckim-gatkINDELI1_5HG002compoundhet*
94.8213
92.3843
97.3904
66.1548
1141594111420306304
99.3464
jpowers-varprowlINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
0.0000
0.2119
0.0000
0.0000
2942000
gduggal-snapplatSNPtimap_l150_m1_e0het
92.8712
92.3848
93.3627
86.3201
1142894211450814456
56.0197
gduggal-snapfbINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
81.8508
71.2279
96.1979
32.2123
23329426806269258
95.9108
ghariani-varprowlINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
0.0000
0.2119
0.0000
0.0000
2942000
qzeng-customSNPtvmap_l250_m2_e0*
77.9675
67.2797
92.6923
95.3450
19399431928152125
82.2368
gduggal-snapfbINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
0944000
gduggal-snapplatINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
0944000
ciseli-customINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
3.0769
0.0000
0.0000
30945000
ciseli-customINDELD16_PLUSHG002complexvar*
48.6337
42.4224
56.9758
58.5526
697946682515432
83.8835
gduggal-snapvardINDELI1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
49.8749
48.6428
51.1711
72.7940
8969461005959462
48.1752
anovak-vgINDELD6_15lowcmp_SimpleRepeat_diTR_11to50het
59.9042
65.3860
55.2704
39.0162
1787946301524401867
76.5164
asubramanian-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
97.0284
97.0399
97.0169
59.6380
31045947336611035709
68.5024
anovak-vgSNPtvHG002compoundhethet
77.7767
79.7346
75.9127
53.8008
3726947434613791030
74.6918
gduggal-snapplatSNPtimap_l150_m2_e0het
93.1053
92.6481
93.5671
87.2010
1193494711956822460
55.9611
ciseli-customINDELD6_15HG002complexvarhetalt
0.0000
6.5153
0.0000
0.0000
66947000
cchapple-customSNPtiHG002complexvarhet
99.7945
99.6988
99.8903
17.3501
313818948313318344249
72.3837
gduggal-snapplatSNPtimap_l150_m1_e0homalt
93.0222
87.0616
99.8589
71.6753
6379948637099
100.0000
dgrover-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.7491
97.4988
98.0006
56.6076
3695494836761750723
96.4000
gduggal-bwaplatSNPtiHG002compoundhethet
83.6361
90.0158
78.1008
46.8217
855694986772433181
7.4394
ckim-isaacINDELD1_5HG002complexvarhomalt
94.8892
91.0360
99.0830
48.9641
964895096178917
19.1011
qzeng-customSNPtvmap_l250_m2_e1*
78.0956
67.4211
92.7860
95.3708
19669501955152125
82.2368
gduggal-bwaplatINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331*
54.1881
37.8431
95.3871
85.0345
5799515792821
75.0000
gduggal-bwaplatINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
54.1881
37.8431
95.3871
85.0345
5799515792821
75.0000
cchapple-customSNP*map_sirenhomalt
99.1241
98.2758
99.9871
48.6990
542059515417377
100.0000
raldana-dualsentieonINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
98.6423
98.0278
99.2646
73.6782
4731995247111349293
83.9542
gduggal-snapplatSNPtimap_l150_m2_e1het
93.1452
92.6854
93.6096
87.2522
1206395212085825463
56.1212
gduggal-snapplatSNPtimap_l150_m2_e0homalt
93.2670
87.4869
99.8649
73.8706
6663953665499
100.0000
hfeng-pmm1INDEL*HG002complexvarhet
98.8731
97.9378
99.8265
56.4583
45259953448887843
55.1282
gduggal-snapfbSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331het
76.4238
95.1325
63.8642
77.1773
186269531898310741319
2.9699
gduggal-snapfbSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
76.4238
95.1325
63.8642
77.1773
186269531898310741319
2.9699
ckim-isaacSNP*segdup*
98.2480
96.6046
99.9484
87.4705
2711495327116147
50.0000
ckim-vqsrINDEL**het
99.5204
99.5086
99.5323
62.3713
193179954192796906561
61.9205
egarrison-hhgaINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
58.0207
41.0019
99.1935
43.8406
66395461555
100.0000
ghariani-varprowlINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
30.1078
27.6176
33.0916
63.8123
364954365738734
99.4580
mlin-fermikitINDELD16_PLUS**
87.3801
85.9375
88.8720
69.7132
58309545846732623
85.1093