PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
80401-80450 / 86044 show all
jpowers-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331het
53.9976
85.3746
39.4857
56.3279
4991855502176957654
99.4672
jpowers-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
53.9976
85.3746
39.4857
56.3279
4991855502176957654
99.4672
gduggal-bwavardSNP*HG002compoundhethetalt
0.0000
0.6961
0.0000
0.0000
6856000
gduggal-bwavardSNPtvHG002compoundhethetalt
0.0000
0.6961
0.0000
0.0000
6856000
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_diTR_51to200hetalt
3.5874
1.8349
80.0000
78.6325
168562054
80.0000
hfeng-pmm1SNPtv*het
99.9077
99.8553
99.9601
20.8554
59084085659076623619
8.0509
gduggal-snapvardINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
4.1479
2.2831
22.6415
66.0800
2085648164113
68.9024
gduggal-snapvardSNP*HG002compoundhethetalt
0.0000
0.6961
0.0000
0.0000
6856000
gduggal-snapvardSNPtvHG002compoundhethetalt
0.0000
0.6961
0.0000
0.0000
6856000
ltrigg-rtg1INDELI1_5*het
99.3128
98.9158
99.7130
54.8506
781848577747122356
25.1121
jpowers-varprowlSNPtimap_l125_m2_e1*
97.7851
97.1965
98.3808
76.1142
2971285729712489165
33.7423
ltrigg-rtg1SNP*map_l100_m2_e0*
99.3059
98.8413
99.7748
59.2762
731078577310416538
23.0303
rpoplin-dv42INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.7633
97.2714
98.2602
58.6360
3055185730554541494
91.3124
rpoplin-dv42INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.7633
97.2714
98.2602
58.6360
3055185730554541494
91.3124
raldana-dualsentieonINDELD6_15**
97.6719
96.7155
98.6474
52.2270
2523585725235346333
96.2428
qzeng-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
85.9606
75.6948
99.4477
36.9246
266985725211412
85.7143
qzeng-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
85.9606
75.6948
99.4477
36.9246
266985725211412
85.7143
gduggal-bwafbSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331het
94.6420
95.6229
93.6811
78.6041
18722857187841267139
10.9708
gduggal-bwafbSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
94.6420
95.6229
93.6811
78.6041
18722857187841267139
10.9708
ltrigg-rtg1SNP*map_l100_m2_e1*
99.3071
98.8520
99.7664
59.3097
738798587387617338
21.9653
jmaeng-gatkINDELI6_15**
97.3971
96.5435
98.2659
53.3907
2396585823970423364
86.0520
jmaeng-gatkSNPtimap_l250_m1_e0homalt
63.5823
46.6086
100.0000
92.3540
74985874900
ckim-gatkSNPtimap_l250_m1_e0homalt
63.5823
46.6086
100.0000
92.8517
74985874900
ltrigg-rtg2SNP*map_l125_m1_e0*
98.9740
98.1071
99.8563
58.5564
44469858444706415
23.4375
mlin-fermikitINDEL*map_l100_m2_e0het
74.8173
62.7655
92.5973
79.8974
1448859145111668
58.6207
gduggal-snapfbINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
65.7529
52.8540
86.9801
38.4187
9638594817243
59.7222
anovak-vgSNPtvmap_l125_m1_e0het
77.0260
91.5169
66.4968
76.6933
9267859926546681021
21.8723
ltrigg-rtg2SNP*map_l125_m2_e0*
98.9920
98.1594
99.8389
61.3454
45863860458657415
20.2703
cchapple-customSNPtvHG002complexvar*
99.7805
99.6506
99.9108
21.2813
245292860244113218153
70.1835
jlack-gatkINDEL*lowcmp_SimpleRepeat_diTR_11to50hetalt
95.4742
91.7900
99.4666
33.0334
961586096975246
88.4615
eyeh-varpipeINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200*
40.8457
34.5247
50.0000
39.0585
454861479479439
91.6493
ltrigg-rtg2SNP*map_l125_m2_e1*
98.9981
98.1759
99.8341
61.4299
46341861463497715
19.4805
ghariani-varprowlSNP*HG002compoundhethetalt
0.0000
0.0000
0.0000
0862000
ghariani-varprowlSNPtvHG002compoundhethetalt
0.0000
0.0000
0.0000
0862000
jpowers-varprowlSNP*HG002compoundhethetalt
0.0000
0.0000
0.0000
0862000
jpowers-varprowlSNPtvHG002compoundhethetalt
0.0000
0.0000
0.0000
0862000
gduggal-bwafbSNPtv*het
99.6077
99.8543
99.3624
27.5297
5908428625909313792213
5.6171
hfeng-pmm2INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.7385
93.7300
99.9465
31.9578
129018631308576
85.7143
gduggal-snapplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
32.9974
26.9036
42.6601
71.8368
318864433582472
81.0997
ltrigg-rtg2INDEL*lowcmp_SimpleRepeat_diTR_11to50*
98.5306
97.6388
99.4388
47.4185
3572886435971203125
61.5764
jpowers-varprowlINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
97.1231
96.5890
97.6631
54.5313
2449486524490586552
94.1980
gduggal-bwavardSNP**hetalt
0.0000
0.6889
0.0000
0.0000
6865000
gduggal-bwavardSNPtv*hetalt
0.0000
0.6889
0.0000
0.0000
6865000
anovak-vgINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
53.2015
46.3732
62.3880
36.5667
748865403924351935
79.4661
asubramanian-gatkSNP*HG002compoundhet*
97.7516
96.6501
98.8785
41.8929
249578652495028328
9.8940
ghariani-varprowlINDELD6_15lowcmp_SimpleRepeat_triTR_11to50*
53.0600
50.0000
56.5189
40.9091
865865867667662
99.2504
gduggal-snapvardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
70.3688
88.2855
58.4973
39.9312
6519865168561195910481
87.6411
gduggal-snapvardSNP**hetalt
0.0000
0.6889
0.0000
0.0000
6865000
gduggal-snapvardSNPtv*hetalt
0.0000
0.6889
0.0000
0.0000
6865000
ckim-dragenINDELD1_5**
99.4199
99.4105
99.4294
60.9956
145880865145840837396
47.3118