PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
79901-79950 / 86044 show all
qzeng-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
94.6261
95.9485
93.3397
58.3275
174307362067114751218
82.5763
bgallagher-sentieonSNP**het
99.8943
99.9607
99.8280
19.9469
187285173618727263227129
3.9975
anovak-vgSNP*HG002compoundhethetalt
0.0000
14.6172
0.0000
0.0000
126736000
anovak-vgSNPtvHG002compoundhethetalt
0.0000
14.6172
0.0000
0.0000
126736000
ckim-dragenINDELI6_15HG002compoundhet*
93.2228
91.6135
94.8896
36.8488
80407368040433432
99.7691
gduggal-bwavardSNP*map_l100_m2_e1homalt
98.6017
97.3521
99.8837
62.7989
27060736266313125
80.6452
gduggal-bwaplatSNP*lowcmp_SimpleRepeat_homopolymer_6to10homalt
93.5326
87.8942
99.9440
58.7524
5351737535331
33.3333
raldana-dualsentieonINDELD6_15HG002compoundhet*
93.9555
91.8392
96.1717
34.6920
82947378290330328
99.3939
eyeh-varpipeINDELD16_PLUS*het
74.8225
76.6382
73.0908
51.0116
24217382230821811
98.7820
gduggal-bwavardSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331het
91.6710
91.9194
91.4238
85.3408
83957388283777129
16.6023
gduggal-bwavardSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
91.6710
91.9194
91.4238
85.3408
83957388283777129
16.6023
ndellapenna-hhgaINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
96.7116
95.4096
98.0496
64.9238
1533973815333305176
57.7049
ndellapenna-hhgaINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
96.7116
95.4096
98.0496
64.9238
1533973815333305176
57.7049
ndellapenna-hhgaSNP*map_l100_m2_e1het
99.0834
98.4264
99.7493
64.4229
461607384616211641
35.3448
ltrigg-rtg1INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.5520
95.8237
99.3437
50.3216
169337381680311174
66.6667
ltrigg-rtg1INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.5520
95.8237
99.3437
50.3216
169337381680311174
66.6667
anovak-vgSNP*map_l250_m2_e1homalt
84.0320
72.8109
99.3418
88.4510
19797391962139
69.2308
ckim-vqsrINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
98.1254
97.6900
98.5646
55.1368
3125373931175454437
96.2555
gduggal-snapplatINDELI1_5lowcmp_SimpleRepeat_triTR_11to50*
31.4068
29.5238
33.5463
77.9887
31074031562444
7.0513
gduggal-snapplatSNPtvlowcmp_SimpleRepeat_quadTR_11to50homalt
84.0660
73.1690
98.7769
51.5065
201874020192512
48.0000
gduggal-bwafbINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
79.9416
70.8547
91.7021
52.3810
17997404313939
100.0000
mlin-fermikitINDELI6_15*het
88.6098
92.6243
84.9289
50.1273
9293740931516531640
99.2136
jlack-gatkINDELD1_5lowcmp_SimpleRepeat_diTR_11to50*
97.6511
96.9845
98.3269
41.1237
2380074023802405370
91.3580
anovak-vgSNPtvmap_l150_m0_e0*
77.9452
82.2472
74.0709
86.1595
343374134281200357
29.7500
qzeng-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
73.9804
73.1132
74.8684
46.1375
20157412276764413
54.0576
gduggal-bwaplatSNPtvHG002compoundhethet
81.9141
84.1429
79.8002
62.7770
39327413994101184
8.3086
gduggal-bwavardSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
97.6687
97.3228
98.0171
65.4411
2693774126644539197
36.5492
gduggal-bwavardSNPtimap_l125_m1_e0*
95.9902
97.4706
94.5540
78.3647
28593742283351632115
7.0466
gduggal-bwafbINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
91.9586
87.5042
96.8908
75.6471
519674226808685
98.8372
hfeng-pmm1INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.3881
95.8010
99.0287
53.0662
1692974216924166154
92.7711
hfeng-pmm1INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.3881
95.8010
99.0287
53.0662
1692974216924166154
92.7711
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
53.4023
37.0119
95.8478
69.3856
4367425542422
91.6667
ciseli-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
33.7717
25.9481
48.3495
68.3855
260742249266179
67.2932
ciseli-customSNPtilowcmp_AllRepeats_lt51bp_gt95identity_merged*
88.2783
97.3461
80.7559
60.7530
27217742274786548433
6.6127
anovak-vgSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331het
86.2248
91.8756
81.2289
81.5160
839174286461998399
19.9700
anovak-vgSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
86.2248
91.8756
81.2289
81.5160
839174286461998399
19.9700
jlack-gatkINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
89.0056
80.5701
99.4139
40.3057
308174332231917
89.4737
ciseli-customINDELI6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
17.7637
11.1244
44.0594
77.0193
9374389113102
90.2655
ndellapenna-hhgaINDELD6_15HG002complexvar*
88.9462
85.9864
92.1169
57.7872
45597434569391292
74.6803
ndellapenna-hhgaINDELI6_15HG002compoundhet*
93.3379
91.5109
95.2392
35.4681
80317458042402334
83.0846
anovak-vgINDELI1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
16.9454
0.0000
0.0000
152745000
anovak-vgSNP**hetalt
0.0000
14.4661
0.0000
0.0000
126745000
anovak-vgSNPtv*hetalt
0.0000
14.4661
0.0000
0.0000
126745000
anovak-vgINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50het
81.2064
88.9071
74.7333
41.7707
5971745665522501626
72.2667
eyeh-varpipeINDELI1_5HG002complexvarhetalt
71.6240
56.8366
96.8118
75.7679
98174512454139
95.1220
ckim-isaacINDEL*lowcmp_SimpleRepeat_quadTR_51to200*
79.1674
71.9397
88.0095
54.7793
19107451857253201
79.4466
gduggal-snapfbINDELI6_15lowcmp_SimpleRepeat_diTR_11to50hetalt
68.4689
57.9334
83.6879
54.1463
10267452364644
95.6522
gduggal-snapplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
43.5514
40.6847
46.8526
86.1967
51174558866717
2.5487
asubramanian-gatkSNPtimap_l250_m0_e0het
33.4817
20.1285
99.4709
99.1011
18874618811
100.0000
ckim-isaacINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50*
95.8927
93.7179
98.1709
38.9030
1112974611110207127
61.3527