PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
79851-79900 / 86044 show all
eyeh-varpipeSNPti**
99.7598
99.9651
99.5553
19.0734
208479172720610839206307
3.3348
gduggal-bwaplatSNP*HG002compoundhethomalt
95.7606
93.2573
98.4021
40.3893
100557279976162149
91.9753
gduggal-bwaplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
77.8626
66.2338
94.4444
82.1887
142872814288426
30.9524
gduggal-snapplatINDELI1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
30.4360
18.8406
79.1469
74.6699
1697281674435
79.5455
gduggal-snapplatSNPtvmap_l125_m2_e0homalt
93.5527
87.9009
99.9811
71.5032
5289728529010
0.0000
gduggal-snapvardINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200*
1.8111
0.9524
18.4211
68.8525
772873122
70.9677
hfeng-pmm3INDELI1_5HG002compoundhet*
96.3303
94.1081
98.6599
63.2057
1162872811632158151
95.5696
egarrison-hhgaSNPtvHG002complexvarhet
99.7360
99.5170
99.9560
21.2359
1500037281500236628
42.4242
gduggal-snapplatINDEL*segdup*
77.9673
71.4789
85.7514
96.5099
1827729198032927
8.2067
ndellapenna-hhgaSNP*map_l100_m1_e0het
99.0732
98.3928
99.7631
62.7556
446307294463210641
38.6792
qzeng-customINDELI1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
89.3374
80.8410
99.8295
33.0289
3076729175732
66.6667
hfeng-pmm2SNPtvHG002complexvar*
99.8387
99.7038
99.9739
21.6976
2454237292453396421
32.8125
ckim-dragenINDELI6_15HG002compoundhethetalt
95.5341
91.4607
99.9873
29.2729
7808729784911
100.0000
jpowers-varprowlINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
84.2056
79.3893
89.6441
65.5967
28087292796323253
78.3282
egarrison-hhgaINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_merged*
74.4984
65.6955
86.0254
69.2922
13987301422231214
92.6407
gduggal-bwaplatSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
82.0159
72.4008
94.5759
92.8167
1915730191811013
11.8182
ckim-dragenINDELI6_15*hetalt
95.5238
91.4630
99.9619
38.0544
7821730786133
100.0000
qzeng-customINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
87.8199
86.2627
89.4344
51.7765
4584730114951358772
56.8483
mlin-fermikitSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331*
95.3085
94.9832
95.6360
75.7457
1384073113850632351
55.5380
mlin-fermikitSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
95.3085
94.9832
95.6360
75.7457
1384073113850632351
55.5380
mlin-fermikitSNPtvmap_l150_m0_e0homalt
51.4655
44.9548
60.1815
60.0161
597731597395356
90.1266
ndellapenna-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
86.7164
95.8976
79.1397
59.1322
170887311843448594632
95.3283
gduggal-snapvardSNP*segdup*
98.2794
97.3955
99.1795
93.1728
273367312707622472
32.1429
raldana-dualsentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
96.4153
95.0558
97.8143
50.9442
1405473114052314309
98.4076
rpoplin-dv42INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
89.7118
87.9829
91.5099
73.1427
53527315303492469
95.3252
gduggal-snapplatINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
51.3343
37.8608
79.6954
89.2663
44673247112038
31.6667
gduggal-snapplatSNP*lowcmp_SimpleRepeat_diTR_11to50homalt
86.0618
78.8133
94.7787
77.2212
2723732274115173
48.3444
gduggal-snapplatSNPtvmap_l125_m2_e1homalt
93.5797
87.9486
99.9813
71.5146
5342732534210
0.0000
anovak-vgSNP*map_l250_m2_e0homalt
83.9868
72.7476
99.3333
88.4225
19547321937139
69.2308
ltrigg-rtg1INDELI1_5HG002compoundhet*
96.6675
94.0758
99.4060
64.7187
11624732115476952
75.3623
jmaeng-gatkINDEL*lowcmp_SimpleRepeat_diTR_11to50hetalt
96.1719
93.0119
99.5542
28.6148
974373298254444
100.0000
cchapple-customSNPtimap_l100_m0_e0*
96.8619
96.6377
97.0872
70.6515
2103973221032631173
27.4168
gduggal-bwaplatINDELI16_PLUSHG002compoundhethetalt
78.6021
65.0263
99.3421
43.5644
1361732135998
88.8889
gduggal-bwafbINDEL*lowcmp_SimpleRepeat_quadTR_51to200*
80.9919
72.4294
91.8503
55.9362
19237322209196151
77.0408
gduggal-bwaplatINDELI16_PLUS*hetalt
78.3575
65.0620
98.4827
54.0810
136573313632119
90.4762
anovak-vgINDEL*map_l100_m1_e0het
70.6925
67.2036
74.5635
86.2608
15027331580539154
28.5714
anovak-vgINDELD1_5HG002compoundhethet
54.0229
57.5810
50.8790
62.2806
995733442842752764
64.6550
ghariani-varprowlSNPtvHG002complexvarhet
98.7696
99.5137
98.0366
26.9661
149998733150145300754
1.7958
gduggal-snapfbINDELD1_5*homalt
97.4626
98.4998
96.4470
62.9841
481927344823717771307
73.5509
ckim-isaacSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
92.9113
89.3360
96.7846
77.0025
6149734629120919
9.0909
ndellapenna-hhgaSNP*map_l100_m2_e0het
99.0800
98.4181
99.7510
64.4052
456657344566711441
35.9649
cchapple-customINDELD6_15**
97.8623
97.1869
98.5472
48.1960
2535873426658393348
88.5496
ckim-dragenINDEL*lowcmp_SimpleRepeat_diTR_11to50*
98.1771
97.9914
98.3635
52.4340
3585773535764595553
92.9412
gduggal-snapfbINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200*
0.0000
0.0000
0.0000
0735000
gduggal-snapvardSNPtvmap_l100_m1_e0*
94.4568
97.0001
92.0434
74.6951
23766735236802047149
7.2789
gduggal-snapplatINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200*
0.0000
0.0000
0.0000
0735000
gduggal-bwafbINDEL*lowcmp_SimpleRepeat_diTR_51to200*
73.4367
65.0167
84.3621
45.9065
13667351845342338
98.8304
raldana-dualsentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
96.6952
95.8752
97.5293
67.9232
1708473516698423393
92.9078
ltrigg-rtg2SNPtimap_sirenhet
99.2569
98.8202
99.6976
45.2238
616457366164618711
5.8824
qzeng-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
94.6261
95.9485
93.3397
58.3275
174307362067114751218
82.5763