PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
79351-79400 / 86044 show all
ltrigg-rtg1SNP*map_l100_m0_e0*
98.8943
98.0421
99.7614
58.2016
32198643322017723
29.8701
ltrigg-rtg1SNPtvHG002complexvar*
99.8396
99.7384
99.9410
21.7226
24551164424576814559
40.6897
jpowers-varprowlINDELI16_PLUS*het
66.0542
76.3061
58.2307
60.8634
2074644208014921486
99.5979
gduggal-bwaplatSNPtvmap_l250_m1_e0homalt
39.7004
24.7664
100.0000
96.2311
21264421200
gduggal-snapplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
36.6202
25.3766
65.7534
73.0876
2196441921002
2.0000
gduggal-snapfbINDELI1_5lowcmp_SimpleRepeat_quadTR_11to50*
79.2799
83.4829
75.4797
66.1968
325564431861035247
23.8647
hfeng-pmm1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
98.7336
97.7570
99.7300
68.1488
2806864428068765
6.5790
hfeng-pmm1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.7336
97.7570
99.7300
68.1488
2806864428068765
6.5790
jlack-gatkSNP*map_l100_m2_e0*
97.0473
99.1293
95.0510
75.5620
73320644733093817291
7.6238
hfeng-pmm3INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
96.9182
95.5942
98.2795
62.6246
1397364413595238216
90.7563
rpoplin-dv42SNPtiHG002complexvar*
99.9216
99.8731
99.9701
17.4429
507791645507725152130
85.5263
asubramanian-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.3409
95.9881
98.7323
65.6784
1543264517602226202
89.3805
asubramanian-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.3409
95.9881
98.7323
65.6784
1543264517602226202
89.3805
gduggal-bwaplatSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
90.2910
84.7806
96.5674
90.4279
3593645360112818
14.0625
gduggal-bwafbINDELI16_PLUSHG002complexvar*
65.8380
50.7257
93.7759
46.3252
6646456784544
97.7778
gduggal-bwafbSNP*map_l100_m2_e0*
99.0302
99.1280
98.9327
69.1496
7331964573321791163
20.6068
gduggal-bwafbSNP*map_l100_m2_e1*
99.0356
99.1356
98.9358
69.1822
7409164674093797164
20.5772
gduggal-bwavardINDEL*lowcmp_SimpleRepeat_diTR_11to50het
69.3555
95.9010
54.3198
55.3205
15114646151651275312310
96.5263
astatham-gatkSNPtimap_l250_m2_e0*
92.8085
87.1006
99.3169
90.7841
436264643623012
40.0000
gduggal-snapvardSNP*map_l150_m2_e0het
89.6113
96.7913
83.4229
84.9670
19487646192543826259
6.7695
hfeng-pmm1INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.2519
95.6239
98.9362
48.5377
1413864714136152147
96.7105
jlack-gatkSNP*map_l100_m2_e1*
97.0682
99.1343
95.0864
75.5739
74090647740793828292
7.6280
bgallagher-sentieonINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
94.1594
93.5769
94.7492
68.8883
94266479275514466
90.6615
gduggal-bwaplatINDEL*map_l100_m2_e1het
83.4646
72.3858
98.5474
93.4041
16966471696258
32.0000
gduggal-bwaplatINDELI6_15lowcmp_SimpleRepeat_diTR_11to50*
82.4404
73.1758
94.3910
71.5718
1765647176710526
24.7619
gduggal-bwafbINDELD1_5HG002complexvarhet
98.1510
96.8794
99.4564
54.4051
201176482085611444
38.5965
gduggal-bwavardINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
0.3077
0.0000
0.0000
2648000
ltrigg-rtg2SNPtimap_l100_m1_e0*
99.2402
98.6481
99.8395
53.2325
47283648472857617
22.3684
qzeng-customINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
85.8273
81.4433
90.7101
41.4412
28446487128730664
90.9589
raldana-dualsentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
91.8394
89.3309
94.4928
61.1176
54346495319310299
96.4516
mlin-fermikitINDELI6_15lowcmp_SimpleRepeat_diTR_11to50hetalt
77.2779
63.3540
99.0460
46.3471
112264911421111
100.0000
mlin-fermikitINDEL*map_l150_m1_e0*
64.0388
51.4948
84.6626
83.0385
689649690125100
80.0000
gduggal-snapvardSNPtimap_l125_m2_e0het
91.7410
96.5618
87.3786
82.2821
18227649180902613206
7.8837
ghariani-varprowlINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
0.1538
0.0000
0.0000
1649000
ciseli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
69.0860
69.8980
68.2927
72.8277
15076491512702277
39.4587
jpowers-varprowlINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
0.1538
0.0000
0.0000
1649000
eyeh-varpipeINDELD6_15HG002complexvarhetalt
51.3277
35.9329
89.8020
58.8427
364649907103102
99.0291
ckim-gatkINDELD1_5*hetalt
96.5155
93.6554
99.5558
62.7234
959565096374343
100.0000
ckim-dragenINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
94.1784
93.5471
94.8182
69.0265
94236509259506472
93.2806
gduggal-snapvardSNP*map_l150_m2_e1het
89.6801
96.8079
83.5299
85.0251
19713650194753840262
6.8229
gduggal-snapvardSNPtimap_l125_m2_e1het
91.7986
96.5945
87.4564
82.3224
18437650182952624207
7.8887
ckim-vqsrINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.2755
98.9912
99.5615
74.4850
6378165063794281255
90.7473
ckim-vqsrINDELD1_5*hetalt
96.5103
93.6457
99.5557
62.7258
959465196364343
100.0000
gduggal-snapfbINDELI1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
86.8622
82.8909
91.2332
40.8368
3154651156115079
52.6667
eyeh-varpipeINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331het
64.1207
64.2111
64.0306
63.4499
11686511004564554
98.2270
eyeh-varpipeINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
64.1207
64.2111
64.0306
63.4499
11686511004564554
98.2270
jmaeng-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.8814
97.0742
98.7022
53.8225
2159965121600284276
97.1831
astatham-gatkSNPtimap_l250_m2_e1*
92.8549
87.1749
99.3266
90.8364
442565144253012
40.0000
anovak-vgSNPtvmap_l150_m1_e0het
75.5604
90.6277
64.7889
80.5286
629565162913419787
23.0184
egarrison-hhgaINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
76.9409
66.2700
91.7077
66.5255
1281652130511898
83.0508