PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FN Query TPQuery FPFP gt% FP ma
79151-79200 / 86044 show all
ghariani-varprowlINDELD1_5lowcmp_SimpleRepeat_diTR_51to200*
15.8746
12.3386
22.2513
50.7732
8661185297292
98.3165
gduggal-snapplatSNPtvmap_l150_m2_e0het
91.9870
91.5747
92.4029
88.3430
66416116641546288
52.7473
gduggal-snapvardINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
72.8639
81.3378
65.9890
43.5053
2663611587530282874
94.9141
astatham-gatkSNPtimap_l250_m2_e1het
89.3914
81.4792
99.0055
92.4310
26886112688279
33.3333
bgallagher-sentieonINDELD1_5HG002compoundhethetalt
96.7320
94.0192
99.6060
57.1663
960561196063838
100.0000
anovak-vgSNP*segdup*
97.8173
97.8231
97.8116
92.2860
2745661127219609236
38.7521
egarrison-hhgaINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
97.7893
98.0137
97.5659
71.4911
3015061130142752362
48.1383
gduggal-bwaplatSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
91.4701
84.2809
100.0000
64.5876
3276611327600
gduggal-bwaplatINDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_merged*
62.3434
46.3628
95.1351
82.5307
5296125282719
70.3704
astatham-gatkINDELI1_5HG002compoundhethetalt
97.1718
94.5245
99.9718
56.8751
105656121062633
100.0000
gduggal-snapvardSNPtimap_l125_m0_e0*
90.9915
95.2045
87.1355
81.6073
12150612120431778144
8.0990
gduggal-snapfbSNP*map_l150_m2_e1het
95.8511
96.9945
94.7343
76.7883
19751612197541098511
46.5392
ghariani-varprowlINDELI6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
36.8301
26.7943
58.8859
77.4791
224612222155153
98.7097
cchapple-customSNP*map_l150_m2_e1het
95.7763
96.9945
94.5883
81.9692
19751612197681131246
21.7507
astatham-gatkINDELI1_5*hetalt
97.1674
94.5243
99.9624
62.1019
105826131064544
100.0000
ltrigg-rtg2INDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.0742
98.7301
99.4207
71.8442
476586134754027783
29.9639
ltrigg-rtg1INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.4824
95.5531
99.4912
43.7067
13172613131006762
92.5373
gduggal-snapplatSNPtvmap_l150_m2_e1het
92.0469
91.6576
92.4396
88.3528
67356136737551289
52.4501
ndellapenna-hhgaINDELI1_5*het
99.3796
99.2245
99.5353
57.8169
7842861378394366178
48.6339
qzeng-customSNPtimap_l250_m0_e0*
67.6335
55.1825
87.3403
98.0910
75661475210986
78.8991
anovak-vgINDELD1_5lowcmp_SimpleRepeat_diTR_51to200*
17.5930
11.9082
33.6634
40.2367
83614102201155
77.1144
ckim-dragenINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.2418
99.0470
99.4374
74.2668
6381761463806361326
90.3047
ckim-dragenINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
96.9831
94.4710
99.6324
29.8141
10491614105713939
100.0000
ltrigg-rtg1SNP**homalt
99.9664
99.9480
99.9848
17.4153
11795436141179482179154
86.0335
jpowers-varprowlSNPtvmap_sirenhet
97.6371
97.8538
97.4214
66.9739
2799561427995741114
15.3846
ltrigg-rtg1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331het
97.1389
95.5295
98.8034
63.4805
131426151312915934
21.3836
ltrigg-rtg1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
97.1389
95.5295
98.8034
63.4805
131426151312915934
21.3836
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
76.8360
71.2348
83.3933
72.7285
15236151622323129
39.9381
asubramanian-gatkSNPtisegdup*
98.1992
96.8521
99.5842
91.3917
1892261518920798
10.1266
bgallagher-sentieonINDELD1_5*hetalt
96.6974
93.9971
99.5574
61.8361
963061596724342
97.6744
qzeng-customINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
79.6963
66.2459
100.0000
93.7500
1207615100
qzeng-customINDELD6_15lowcmp_SimpleRepeat_diTR_51to200*
52.6084
47.9255
58.3056
39.7096
566615702502328
65.3386
hfeng-pmm1INDELI1_5HG002compoundhethetalt
97.1665
94.4976
99.9906
57.5817
105626151061811
100.0000
ckim-isaacSNPtisegdup*
98.3830
96.8521
99.9630
86.8421
189226151892273
42.8571
ckim-isaacSNP*lowcmp_SimpleRepeat_homopolymer_6to10*
98.0495
96.4138
99.7416
53.4125
16561616165994338
88.3721
egarrison-hhgaINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.0336
96.1684
97.9144
65.7408
1546161615446329175
53.1915
egarrison-hhgaINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.0336
96.1684
97.9144
65.7408
1546161615446329175
53.1915
bgallagher-sentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
96.9869
94.4529
99.6605
29.5910
10489616105693636
100.0000
astatham-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.5076
98.0387
98.9810
60.6867
3079261630792317296
93.3754
astatham-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.5076
98.0387
98.9810
60.6867
3079261630792317296
93.3754
jmaeng-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.7400
96.1684
99.3638
68.4150
15461616154629969
69.6970
jmaeng-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.7400
96.1684
99.3638
68.4150
15461616154629969
69.6970
eyeh-varpipeINDELI6_15lowcmp_SimpleRepeat_quadTR_11to50*
63.9710
53.3687
79.8301
38.1774
7056162632665660
99.2481
gduggal-bwafbSNP*map_sirenhet
98.9549
99.3230
98.5895
60.8677
90375616903791293200
15.4679
hfeng-pmm1INDELI1_5*hetalt
97.1621
94.4975
99.9812
62.7564
105796161063722
100.0000
gduggal-snapplatINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_51to200*
0.0000
0.0000
0.0000
0616000
gduggal-snapfbINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_51to200*
0.0000
0.0000
0.0000
0616000
ghariani-varprowlINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
58.3031
43.3824
88.8679
72.0464
4726164715957
96.6102
ciseli-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
0.0000
2.5316
0.0000
0.0000
16616000
jpowers-varprowlINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
58.1841
43.2904
88.7006
71.9789
4716174716058
96.6667